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Sample GSM116217 Query DataSets for GSM116217
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 16 days after gamma irradiation at 30Gy (g_8520_30_16d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 16days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5558.6489 73.2003 G 64.7412 5633.6489 2882.0000 5780.0298 153 13.9572792053223 87.0179624432034 75.2982 75.0000 8.0120 118 73.2003
1002 1230.0400 16.1981 G 15.3044 1303.0400 1533.0000 678.5201 127 12.7161874771118 85.1416606461122 73.3445 73.0000 8.0944 123 16.1981
1003 19.5000 0.2568 G 1.0861 95.5000 95.0000 10.7437 68 9.30485343933105 87.9269928290806 75.7072 76.0000 7.9513 187 0.2568
1004 48.5657 0.6395 G 1.4131 122.5657 122.0000 17.8406 99 11.2272310256958 86.7342504517008 74.6083 74.0000 8.4895 124 0.6395
1005 41.3939 0.5451 G 1.3338 115.3939 113.0000 15.4271 66 9.16699600219727 86.5162647927566 74.9670 74.0000 8.3442 188 0.5451
1006 10.0286 L 0.9659 86.0286 85.0000 10.7291 35 6.67558097839355 89.0689993498726 75.4011 76.0000 8.7127 188 0.1321
1007 5932.6968 78.1260 G 67.0906 6008.6968 3366.0000 5836.9580 147 13.6808700561523 89.5608840142902 76.4667 76.0000 9.0406 124 78.1260
1008 6069.6377 79.9294 G 70.1597 6144.6377 3797.0000 6107.8682 151 13.8657550811768 87.5807502634306 75.0769 75.0000 8.3872 121 79.9294
1010 285.0840 3.7542 G 4.1149 360.0840 400.0000 106.6771 121 12.4121704101563 87.5078670067551 75.6842 75.0000 8.3386 118 3.7542
1012 371.2527 4.8889 G 5.0086 447.2527 494.0000 179.2905 91 10.7640514373779 89.2962317451997 75.9396 76.0000 8.8642 188 4.8889
1013 30.1875 0.3975 G 1.1990 104.1875 105.0000 13.2769 64 9.02703380584717 86.8958563832537 74.3626 74.0000 8.5972 188 0.3975
1014 5826.1372 76.7228 G 65.3356 5903.1372 2672.0000 5918.9775 155 14.04820728302 90.3510248998501 76.8333 77.0000 8.9007 124 76.7228
1015 5692.8101 74.9670 G 64.4882 5768.8101 3165.0000 5717.8848 160 14.2729930877686 89.4553377236237 76.4583 76.0000 8.9702 124 74.9670
1017 22.9714 0.3025 G 1.1321 97.9714 98.0000 12.6355 70 9.44069766998291 86.5404106227365 74.8771 75.0000 7.6936 185 0.3025
1018 20.5342 0.2704 G 1.0898 95.5342 95.0000 10.4503 73 9.64087581634521 87.6618773461248 74.7059 75.0000 8.4412 176 0.2704
1019 54.1711 0.7134 G 1.5095 126.1711 128.0000 20.1712 76 9.83698177337646 83.5855475274571 73.4670 72.0000 7.7237 188 0.7134
1020 13.0238 L 0.9958 89.0238 91.0000 11.0808 42 7.3127326965332 89.4016198424596 75.5934 76.0000 8.9344 188 0.1715
1021 5671.1318 74.6816 G 68.3165 5743.1318 2822.0000 5850.1133 161 14.3175268173218 84.0665623005864 72.6190 72.0000 8.0444 109 74.6816
1022 5457.7153 71.8711 G 62.7765 5532.7153 2904.0000 5566.8120 146 13.6342573165894 88.1334933350315 74.3898 75.0000 8.7557 122 71.8711
1024 7.8485 L 0.9403 81.8485 83.0000 10.5891 33 6.48204469680786 87.0414552283673 74.5176 74.0000 8.6943 176 0.1034

Total number of rows: 36227

Table truncated, full table size 4520 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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