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Sample GSM116221 Query DataSets for GSM116221
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 22 days after gamma irradiation at 50Gy (g_8520_50_22d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 22days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5975.1704 74.9406 G 69.2338 6050.1704 4388.0000 5655.0840 143 13.4934520721436 87.3874634295941 75.0604 75.0000 8.2583 188 74.9406
1002 1278.7787 16.0384 G 15.5912 1353.7787 1589.0000 766.2509 133 13.0131034851074 86.8296187671984 75.5000 75.0000 7.8864 114 16.0384
1003 19.5167 0.2448 G 1.0817 94.5167 96.0000 12.1922 60 8.74038791656494 87.375741788708 74.7624 75.0000 8.2505 187 0.2448
1004 59.4787 0.7460 G 1.5619 133.4787 133.0000 16.5932 94 10.9400415420532 85.4584453716959 73.7473 74.0000 7.6390 188 0.7460
1005 58.4648 0.7333 G 1.5517 131.4648 133.0000 22.0063 71 9.50789165496826 84.7238285355971 73.9834 73.0000 7.8159 187 0.7333
1006 15.6522 0.1963 G 1.0356 87.6522 88.0000 9.4253 46 7.65303993225098 84.6381345531322 72.0824 72.0000 8.4254 188 0.1963
1007 5755.8477 72.1898 G 67.1026 5830.8477 2969.0000 5647.8730 153 13.9572792053223 86.8945312651004 75.6417 75.0000 7.9297 124 72.1898
1008 6071.7974 76.1525 G 70.3797 6146.7974 4126.0000 5720.7046 150 13.8197660446167 87.3376185159783 74.9746 75.0000 8.2251 122 76.1525
1010 223.9167 2.8084 G 3.3890 298.9167 316.0000 80.9042 122 12.4633550643921 88.2031913196196 74.8500 75.0000 8.8021 124 2.8084
1012 357.2421 4.4805 G 5.0152 432.2421 484.0000 168.3809 95 10.9980792999268 86.1865658174693 74.7473 75.0000 7.4577 188 4.4805
1013 35.7671 0.4486 G 1.2677 109.7671 109.0000 13.1675 73 9.64087581634521 86.5888236793181 74.5440 74.0000 8.3925 188 0.4486
1014 6062.9019 76.0409 G 70.0394 6136.9019 2972.0000 5955.6904 155 14.04820728302 87.6207012806359 75.0583 74.0000 9.0805 124 76.0409
1015 6122.3740 76.7868 G 71.4622 6196.3740 4379.0000 5735.0586 149 13.7736234664917 86.7083536357522 74.5983 74.0000 8.4722 121 76.7868
1017 31.4474 0.3944 G 1.2304 103.4474 103.0000 13.0680 76 9.83698177337646 84.0771702971304 73.2308 72.0000 8.0515 188 0.3944
1018 21.4030 0.2684 G 1.1042 94.4030 94.0000 10.6869 67 9.23618125915527 85.4945443506056 73.0756 73.0000 8.3297 178 0.2684
1019 56.1918 0.7048 G 1.5113 129.1918 131.0000 21.6027 73 9.64087581634521 85.4861406563255 73.2582 73.0000 8.3241 188 0.7048
1020 18.2154 0.2285 G 1.0804 90.2154 90.0000 10.2799 65 9.09728336334229 83.5022254195902 72.8462 72.0000 7.6681 188 0.2285
1021 5806.0259 72.8191 G 70.6432 5877.0259 4117.0000 5720.8057 157 14.1385507583618 83.1931094895178 71.9167 71.0000 8.1287 124 72.8191
1022 5948.3608 74.6043 G 69.7845 6020.3608 4618.0000 5545.9258 135 13.1105813980103 86.2706887654699 73.7667 72.0000 9.5138 124 74.6043
1024 7.0189 L 0.9340 81.0189 82.0000 11.2022 53 8.21472454071045 86.7466640305364 73.2667 74.0000 8.4978 124 0.0880

Total number of rows: 36227

Table truncated, full table size 4524 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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