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Sample GSM116227 Query DataSets for GSM116227
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, no irradiation (g_mmca_0_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10328.8262 91.4995 G 115.6707 10405.8262 4970.0000 10833.2100 157 14.1385507583618 89.9607424110868 76.2185 77.0000 8.6405 123 91.4995
1002 5354.0264 47.4295 G 61.2796 5429.0264 5364.0000 4268.8389 154 14.0028171539307 88.5942980022085 75.5622 75.0000 9.0629 225 47.4295
1003 132.0841 1.1701 G 2.3837 206.0841 218.0000 57.9792 109 11.7806243896484 86.4572018645754 74.4454 74.0000 8.3048 123 1.1701
1004 109.1327 0.9668 G 2.0466 183.1327 192.0000 40.9934 100 11.2837915420532 89.483253621961 75.6975 74.0000 10.3222 123 0.9668
1005 33.2459 0.2945 G 1.2169 108.2459 110.0000 13.8193 61 8.81292343139648 88.9528825189929 75.1538 75.0000 9.3019 188 0.2945
1006 27.1923 0.2409 G 1.1480 102.1923 100.0000 12.6977 52 8.1368579864502 89.0146843651183 75.4945 75.0000 9.3431 188 0.2409
1007 10554.5508 93.4991 G 114.5760 10632.5508 5080.0000 11089.7949 151 13.8657550811768 92.79911869351 77.7311 78.0000 9.8661 123 93.4991
1008 10429.0117 92.3870 G 116.5846 10507.0117 3979.0000 11372.5449 168 14.6254653930664 90.1235235559623 77.9750 78.0000 8.0823 124 92.3870
1010 322.3419 2.8555 G 4.4455 397.3419 428.0000 134.4647 119 12.3091630935669 89.3799129054461 76.1167 75.0000 9.5866 124 2.8555
1012 628.0761 5.5639 G 7.9323 704.0761 823.0000 352.6069 92 10.8230323791504 88.7604844405892 76.3425 76.0000 8.5070 187 5.5639
1013 45.7222 0.4050 G 1.3497 123.7222 126.0000 14.7838 72 9.57461452484131 91.6678383746098 78.2363 78.0000 9.1119 188 0.4050
1014 10898.0244 96.5419 G 118.5111 10977.0244 4669.0000 11821.9492 165 14.4942932128906 92.6244227150499 79.0917 79.0000 9.0829 124 96.5419
1015 10670.7275 94.5283 G 114.6511 10749.7275 5310.0000 11399.9385 156 14.093451499939 93.7603335526638 79.6417 79.0000 9.8402 124 94.5283
1017 23.5429 0.2086 G 1.1140 100.5429 101.0000 11.6186 70 9.44069766998291 90.2558723623836 77.1868 77.0000 8.8372 188 0.2086
1018 112.4845 0.9965 G 2.0996 188.4845 194.0000 35.7140 97 11.1132459640503 89.7697340660608 75.3785 76.0000 9.1798 183 0.9965
1019 183.3636 1.6244 G 2.8813 261.3636 281.0000 72.9688 77 9.90148735046387 90.7113050093766 76.9670 78.0000 8.4742 188 1.6244
1020 32.8906 0.2914 G 1.2083 108.8906 109.0000 16.3947 64 9.02703380584717 90.1171765005335 76.9615 76.0000 9.4115 188 0.2914
1021 10863.5947 96.2369 G 120.3295 10940.5947 5803.0000 11581.1299 155 14.04820728302 90.9219905066148 77.0833 77.0000 9.2813 124 96.2369
1022 11043.0225 97.8263 G 123.6112 11120.0225 4105.0000 12157.6641 177 15.0121088027954 89.959679828959 76.8364 77.0000 8.6398 114 97.8263
1024 6.9737 L 0.9329 83.9737 81.0000 13.2714 38 6.95579624176025 90.0089969087541 76.6092 77.0000 8.6727 180 0.0618

Total number of rows: 36227

Table truncated, full table size 4554 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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