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Sample GSM116228 Query DataSets for GSM116228
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 9 days after no irradiation (g_mmca_0_9d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 3421.8552 37.4761 G 41.4179 3494.8552 4362.0000 2237.3313 154 14.0028171539307 84.3802083856207 74.1964 73.0000 7.5868 232 37.4761
1003 102.0089 1.1172 G 2.0402 177.0089 179.0000 32.2214 115 12.1005182266235 86.7615624793301 74.8824 75.0000 7.8410 123 1.1172
1004 64.4636 0.7060 G 1.6279 137.4636 140.0000 22.3146 112 11.9416427612305 84.4446422004186 72.3083 73.0000 7.6298 124 0.7060
1005 18.9792 0.2079 G 1.0691 94.9792 92.0000 7.8515 48 7.81764030456543 88.8420708017612 75.5879 76.0000 8.5614 188 0.2079
1006 20.3968 0.2234 G 1.0960 95.3968 95.0000 11.7885 63 8.95623207092285 87.0412549569675 74.9011 75.0000 8.0275 188 0.2234
1010 221.4677 2.4255 G 3.3773 296.4677 314.0000 89.8659 126 12.6660251617432 87.7820934321764 75.5500 75.0000 8.5214 124 2.4255
1012 366.7813 4.0170 G 5.0770 439.7813 479.0000 164.9485 96 11.0558128356934 86.6230945233269 74.3621 73.0000 9.0821 180 4.0170
1013 29.4857 0.3229 G 1.2074 103.4857 100.0000 12.8305 70 9.44069766998291 85.7121648815172 73.9780 74.0000 7.8081 188 0.3229
1017 36.0990 0.3954 G 1.2824 109.0990 109.0000 13.0729 103 11.4517974853516 85.0724709755892 73.5085 73.0000 8.0483 122 0.3954
1018 64.0667 0.7017 G 1.5747 138.0667 138.0000 20.1439 107 11.6720447540283 87.6787925719446 74.0513 74.0000 9.1192 121 0.7017
1019 91.4605 1.0017 G 1.8988 165.4605 163.0000 33.5114 76 9.83698177337646 87.1412397370036 74.1978 74.0000 8.7608 188 1.0017
1020 24.3279 0.2664 G 1.1261 98.3279 97.0000 13.8974 61 8.81292343139648 87.3166016565124 74.1167 74.0000 8.8777 186 0.2664
1024 10.5208 L 0.9705 85.5208 89.0000 11.5704 48 7.81764030456543 88.1187102942663 74.8187 75.0000 8.7458 188 0.1152
1026 396.3469 4.3408 G 5.4004 471.3469 499.0000 188.9988 98 11.1703834533691 87.2806931694064 74.5330 75.0000 8.1871 188 4.3408
1027 20.1081 0.2202 G 1.0806 95.1081 96.0000 11.8019 37 6.86366271972656 88.0139317625167 76.5056 75.0000 8.6760 186 0.2202
1030 56.5660 0.6195 G 1.4750 130.5660 134.0000 18.7300 108 11.7264604568481 88.518045717342 73.8908 74.0000 9.6787 123 0.6195
1031 53.9048 0.5904 G 1.4494 129.9048 131.0000 18.4703 107 11.6720447540283 89.6246004923546 75.8475 76.0000 9.0831 122 0.5904
1034 194.1631 2.1265 G 3.0685 269.1631 279.0000 65.1123 92 10.8230323791504 87.7185836315556 74.3077 75.0000 8.4791 188 2.1265
1039 65.9294 0.7221 G 1.6310 138.9294 140.0000 20.6602 85 10.4031419754028 85.1803963765687 73.4396 73.0000 8.1203 188 0.7221
1040 15.0652 0.1650 G 1.0304 88.0652 88.0000 8.3754 46 7.65303993225098 85.4633473210818 73.1978 73.0000 8.3089 188 0.1650

Total number of rows: 36227

Table truncated, full table size 4544 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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