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Sample GSM116229 Query DataSets for GSM116229
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 9 days after no irradiation (g_mmca_0_9d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 3216.5874 43.7961 G 35.1663 3293.5874 4002.0000 1890.8446 145 13.5874843597412 93.6575466915959 78.1956 77.0000 11.1050 233 43.7961
1003 94.4375 1.2858 G 1.9680 169.4375 174.0000 29.1326 114 12.0477924346924 86.0955007870891 75.9160 75.0000 7.3970 123 1.2858
1004 54.4815 0.7418 G 1.4701 130.4815 132.0000 19.9506 110 11.8345403671265 88.7584227445668 76.7333 76.0000 8.5056 124 0.7418
1005 35.7097 0.4862 G 1.2691 110.7097 110.0000 14.4405 62 8.88486671447754 87.237904325382 74.5769 75.0000 8.1586 188 0.4862
1006 24.7903 0.3375 G 1.1297 99.7903 99.0000 12.9118 62 8.88486671447754 88.3352083022034 74.8571 75.0000 8.8901 188 0.3375
1010 228.8480 3.1159 G 3.5138 302.8480 330.0000 78.7849 127 12.7161874771118 86.1883595051755 74.4083 74.0000 8.1256 124 3.1159
1012 346.1939 4.7137 G 4.9223 420.1939 471.0000 171.4449 98 11.1703834533691 85.3649173330192 74.4778 74.0000 7.5766 186 4.7137
1013 32.0526 0.4364 G 1.2169 106.0526 107.0000 12.6146 76 9.83698177337646 87.1505109023123 74.9121 74.0000 8.7670 188 0.4364
1017 26.8333 0.3654 G 1.1700 100.8333 101.0000 12.1544 78 9.96557521820068 86.1846948815939 74.6099 74.0000 8.1231 188 0.3654
1018 80.8598 1.1010 G 1.7496 157.8598 155.0000 27.8482 109 11.7806243896484 90.2248287909119 76.5417 77.0000 8.8166 124 1.1010
1019 100.9750 1.3748 G 2.0298 174.9750 181.0000 38.1962 80 10.0925302505493 86.2011459292684 74.7747 74.0000 8.1341 188 1.3748
1020 21.0833 0.2871 G 1.0929 97.0833 97.0000 11.7165 60 8.74038791656494 88.8327406017022 76.2686 76.0000 8.5552 181 0.2871
1024 13.5957 0.1851 G 1.0204 91.5957 91.0000 13.5798 47 7.73577785491943 89.7642467712895 77.3000 78.0000 7.8428 186 0.1851
1026 431.0947 5.8697 G 5.7368 506.0947 573.0000 183.4605 95 10.9980792999268 88.2184560488039 75.6813 75.0000 8.8123 188 5.8697
1027 14.5435 0.1980 G 1.0127 90.5435 94.0000 9.9754 46 7.65303993225098 89.405623228373 75.6264 76.0000 8.9371 188 0.1980
1030 61.5347 0.8378 G 1.5346 136.5347 139.0000 16.7146 103 11.4517974853516 88.9708399446352 74.4630 75.0000 9.3139 112 0.8378
1031 40.4643 0.5509 G 1.3218 116.4643 115.0000 15.7989 84 10.3417663574219 88.1092180187473 74.8516 76.0000 8.0728 188 0.5509
1034 175.7174 2.3925 G 2.8814 250.7174 265.0000 61.6662 92 10.8230323791504 87.0114634857327 74.1923 75.0000 8.0076 188 2.3925
1039 56.7108 0.7722 G 1.5065 131.7108 133.0000 18.8594 83 10.2800235748291 87.4278205578026 73.7363 75.0000 8.2852 188 0.7722
1040 18.2593 0.2486 G 1.0585 92.2593 91.0000 13.8178 54 8.29185962677002 87.1631831131598 73.5989 74.0000 8.7755 183 0.2486

Total number of rows: 36227

Table truncated, full table size 4534 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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