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Sample GSM116233 Query DataSets for GSM116233
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 9 days after gamma irradiation at 30Gy (g_mmca_30_9d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 3831.2847 40.9088 G 46.2001 3902.2847 4885.0000 2415.4966 139 13.303394317627 84.4648045600535 71.5437 71.0000 8.9765 107 40.9088
1003 91.2449 0.9743 G 1.9357 161.2449 162.0000 26.8948 98 11.1703834533691 83.3025836900964 71.0000 70.0000 8.8684 151 0.9743
1004 60.1412 0.6422 G 1.5486 130.1412 130.0000 18.5124 85 10.4031419754028 84.036441699808 71.0275 70.0000 9.3576 188 0.6422
1005 19.0227 0.2031 G 1.0786 90.0227 90.0000 11.1386 44 7.48482084274292 83.4643373095288 71.6593 71.0000 8.3096 188 0.2031
1006 17.1000 0.1826 G 1.0419 88.1000 88.0000 11.3882 50 7.97884559631348 84.5589605548992 71.4505 71.0000 9.0393 188 0.1826
1010 261.8571 2.7960 G 3.9792 331.8571 373.0000 120.7011 114 12.0477924346924 83.3988879906683 71.0297 70.0000 8.9326 105 2.7960
1012 494.2375 5.2773 G 6.9688 563.2375 654.0000 276.0575 80 10.0925302505493 80.8223322453425 69.1868 69.0000 7.8816 188 5.2773
1013 22.9259 0.2448 G 1.1463 94.9259 92.0000 11.0986 54 8.29185962677002 82.809636077919 71.1703 72.0000 7.2064 188 0.2448
1017 63.9310 0.6826 G 1.6469 133.9310 132.0000 20.9075 87 10.5248203277588 81.3233369718483 70.4780 70.0000 7.5489 188 0.6826
1018 60.4023 0.6449 G 1.5872 132.4023 135.0000 17.9459 87 10.5248203277588 83.4182829084037 71.6374 72.0000 7.6122 188 0.6449
1019 137.6154 1.4694 G 2.5060 208.6154 230.0000 56.7103 78 9.96557521820068 83.2453562930374 70.6538 71.0000 8.1636 188 1.4694
1020 21.7719 0.2325 G 1.1199 92.7719 93.0000 11.8099 57 8.51907634735107 82.8425435919359 71.0604 71.0000 7.8950 188 0.2325
1024 6.5000 L 0.9122 78.5000 76.0000 9.8005 30 6.18038702011108 86.056670405558 72.4396 72.0000 9.3711 188 0.0694
1026 379.5955 4.0532 G 5.3569 452.5955 518.0000 182.7075 89 10.6451082229614 84.4891134862347 72.4670 73.0000 7.6594 188 4.0532
1027 8.8286 L 0.9642 80.8286 80.0000 11.0000 35 6.67558097839355 83.829276843088 72.4194 72.0000 7.8862 161 0.0943
1030 57.6829 0.6159 G 1.5269 130.6829 128.0000 20.4080 82 10.2179079055786 85.5851925493071 73.2253 73.0000 8.3901 188 0.6159
1031 65.1463 0.6956 G 1.6178 137.1463 138.0000 19.3120 82 10.2179079055786 84.7726325300322 71.6415 72.0000 8.5151 165 0.6956
1034 218.3253 2.3312 G 3.4301 289.3253 314.0000 104.5891 83 10.2800235748291 84.3481751457495 71.1429 71.0000 8.8988 188 2.3312
1039 43.7439 0.4671 G 1.4073 114.7439 113.0000 15.9242 82 10.2179079055786 81.5345789075737 71.4396 71.0000 7.0231 188 0.4671
1040 11.6129 L 0.9941 82.6129 82.0000 12.5908 62 8.88486671447754 83.1042821342948 71.4956 71.0000 8.0695 117 0.1240

Total number of rows: 36227

Table truncated, full table size 4534 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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