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Sample GSM116236 Query DataSets for GSM116236
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50Gy (g_mmca_50_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10499.0537 64.5166 G 110.7241 10581.0537 6106.0000 10864.4189 152 13.9115924835205 95.5623381216715 82.8167 82.0000 9.0416 124 64.5166
1002 5539.9849 34.0432 G 57.6900 5621.9849 6146.0000 3706.9390 136 13.1590490341187 97.451689566655 82.6417 82.0000 10.3011 124 34.0432
1003 100.5306 0.6178 G 1.9520 179.5306 178.0000 32.3085 98 11.1703834533691 91.9704846696307 79.9447 79.0000 8.6470 187 0.6178
1004 82.5730 0.5074 G 1.7567 160.5730 157.0000 28.5385 89 10.6451082229614 91.4063884111354 78.1923 78.0000 8.9376 188 0.5074
1005 29.1613 0.1792 G 1.1910 107.1613 106.0000 13.0535 62 8.88486671447754 89.9770506662994 78.5110 78.0000 7.9847 188 0.1792
1006 26.3333 0.1618 G 1.1283 106.3333 106.0000 14.0736 51 8.0582389831543 94.241434195347 79.9176 80.0000 9.4943 188 0.1618
1007 10882.8350 66.8750 G 114.4303 10964.8350 4753.0000 11272.6797 147 13.6808700561523 95.8210948404138 81.9667 82.0000 9.2141 124 66.8750
1008 11270.3652 69.2563 G 118.1718 11351.3652 5991.0000 11653.9023 150 13.8197660446167 96.0581201392987 81.4167 81.0000 10.0387 124 69.2563
1010 414.3077 2.5459 G 5.2032 494.3077 545.0000 191.9314 119 12.3091630935669 95.0002305727772 80.2167 80.0000 10.0002 124 2.5459
1012 570.6489 3.5066 G 7.0925 648.6489 709.0000 310.7106 94 10.9400415420532 91.454994103529 78.2473 78.0000 8.9700 188 3.5066
1013 43.4923 0.2673 G 1.3209 121.4923 117.0000 17.9290 65 9.09728336334229 91.9794927926404 78.2692 78.0000 9.3197 188 0.2673
1014 10901.0771 66.9871 G 114.2710 10984.0771 3429.0000 11725.9443 158 14.1835060119629 96.1230734307113 82.6000 83.0000 8.7487 124 66.9871
1015 11297.4131 69.4226 G 116.6115 11380.4131 7130.0000 11361.7197 152 13.9115924835205 97.5925421978065 82.7750 83.0000 9.7284 124 69.4226
1017 47.6623 0.2929 G 1.3598 126.6623 126.0000 14.0570 77 9.90148735046387 93.1497234493394 79.4560 79.0000 9.4332 188 0.2929
1018 105.7826 0.6500 G 2.0112 184.7826 188.0000 35.4514 92 10.8230323791504 91.877961613789 79.3077 79.0000 8.5853 188 0.6500
1019 170.1899 1.0458 G 2.6908 251.1899 278.0000 71.6003 79 10.0292530059814 93.3512528034614 80.3242 81.0000 8.2342 188 1.0458
1020 32.7143 0.2010 G 1.2143 112.7143 113.0000 15.3400 63 8.95623207092285 92.8216882777367 79.1722 80.0000 8.5478 186 0.2010
1021 11052.6387 67.9184 G 120.5611 11131.6387 5508.0000 11622.3770 157 14.1385507583618 92.3318947563597 80.3950 79.0000 8.8879 123 67.9184
1022 11457.9707 70.4092 G 122.6176 11539.9707 4224.0000 12272.1143 171 14.7554721832275 94.1134997700621 82.5167 82.0000 8.0757 124 70.4092
1024 5.6154 L 0.9172 86.6154 86.0000 11.2238 91 10.7640514373779 94.4386413844211 81.0881 81.0000 8.9591 235 0.0345

Total number of rows: 36227

Table truncated, full table size 4581 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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