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Sample GSM116243 Query DataSets for GSM116243
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, no irradiation (g_nfsa_0_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 13399.0000 C 98.5615 13502.0000 12723.0000 11475.2891 141 13.3987598419189 136.990662180748 107.7667 103.0000 22.6604 124 91.1953
1002 2104.3870 C 19.1357 2200.3870 2280.0000 1269.5907 139 13.303394317627 114.988486563737 96.5000 96.0000 12.6590 124 14.3227
1003 21.0408 CL 0.6298 126.0408 121.0000 29.0179 49 7.89865398406982 200.113202037004 117.2451 105.0000 63.4088 106 0.1432
1004 140.0741 C 1.9984 239.0741 242.0000 52.1294 110 11.8345403671265 119.635396183703 98.7745 99.0000 13.7569 106 0.9534
1005 24.2642 C 1.0435 122.2642 123.0000 16.2807 53 8.21472454071045 117.164834717928 99.3018 98.0000 12.7766 175 0.1651
1006 20.9286 0.1424 G 1.0072 104.9286 109.0000 13.9068 42 7.3127326965332 104.179289688495 86.8077 84.0000 13.4529 188 0.1424
1007 12581.1299 85.6288 G 124.8641 12664.1299 9434.0000 11509.5986 156 14.093451499939 101.423339420275 84.2167 83.0000 12.2822 124 85.6288
1008 12387.1719 84.3087 G 134.3615 12466.1719 5738.0000 12474.5400 165 14.4942932128906 92.7808251100787 77.8583 79.0000 9.1872 124 84.3087
1010 474.0634 3.2265 G 6.2121 548.0634 577.0000 243.6715 144 13.5405502319336 88.2244427693966 74.6696 74.0000 9.4830 232 3.2265
1012 1126.6337 7.6680 G 12.6039 1203.6337 1324.0000 601.3646 103 11.4517974853516 95.4971906256833 78.7308 77.0000 12.3315 188 7.6680
1013 103.5357 0.7047 G 1.9495 180.5357 183.0000 37.2605 84 10.3417663574219 92.6044633289739 77.7473 77.0000 10.4030 188 0.7047
1014 12352.1592 84.0704 G 136.3505 12430.1592 7731.0000 12163.1309 172 14.7985544204712 91.1632762663097 77.5833 78.0000 8.7755 124 84.0704
1015 11590.4111 78.8859 G 129.8197 11668.4111 4640.0000 12216.5244 177 15.0121088027954 89.881676750084 77.6500 78.0000 7.9211 124 78.8859
1017 69.9808 0.4763 G 1.6296 143.9808 144.0000 23.5311 106 11.617374420166 88.3526538532946 74.3917 74.0000 9.5684 124 0.4763
1018 33.7763 0.2299 G 1.2267 108.7763 109.0000 15.8327 76 9.83698177337646 88.674316035327 75.6833 75.0000 9.1162 186 0.2299
1019 129.4167 0.8808 G 2.3040 204.4167 211.0000 47.7362 84 10.3417663574219 88.7228573004435 75.0385 75.0000 9.1486 188 0.8808
1020 42.0921 0.2865 G 1.3253 117.0921 119.0000 16.3660 76 9.83698177337646 88.3514746057806 75.9066 75.0000 8.9010 188 0.2865
1021 12297.7500 83.7001 G 139.5863 12372.7500 6539.0000 12057.1670 166 14.5381488800049 88.6387301340216 75.2917 75.0000 9.0925 124 83.7001
1022 13800.5508 93.9284 G 142.9170 13881.5508 9338.0000 13318.2861 171 14.7554721832275 97.1301736124346 81.2034 81.0000 10.7534 122 93.9284
1024 0.9655 L 0.8238 81.9655 76.0000 11.2080 29 6.07650756835938 99.5011281085936 81.7740 81.0000 12.3341 183 0.0066

Total number of rows: 36227

Table truncated, full table size 4577 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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