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Sample GSM116244 Query DataSets for GSM116244
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30Gy (g_nfsa_30_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10575.0273 97.5742 G 119.3301 10652.0273 4064.0000 11232.8408 221 16.7745628356934 89.2651940218808 77.1843 77.0000 8.1768 225 97.5742
1002 1399.5414 12.9134 G 16.0872 1477.5414 1731.0000 808.1476 159 14.2283201217651 91.8456343763275 79.1060 78.0000 9.2304 225 12.9134
1003 20.8605 0.1925 G 1.0723 96.8605 96.0000 11.8657 86 10.4641580581665 90.3326498276116 75.8417 76.0000 9.5551 124 0.1925
1004 51.9107 0.4790 G 1.4246 128.9107 128.0000 18.9927 114 12.0477924346924 90.4880567780011 76.9000 77.0000 8.9920 124 0.4790
1005 10.7143 L 0.9700 86.7143 88.0000 8.4552 42 7.3127326965332 89.3923187425609 76.0824 76.0000 8.9282 188 0.0989
1006 10.8182 L 0.9636 87.8182 90.0000 13.1136 33 6.48204469680786 91.1348252278394 76.5495 77.0000 9.4232 188 0.0998
1007 10993.0723 101.4314 G 120.3668 11071.0723 4777.0000 11602.0469 224 16.888032913208 91.9778204736196 78.2996 78.0000 9.3186 235 101.4314
1008 11717.1152 108.1121 G 127.5485 11796.1152 7338.0000 11704.3311 203 16.0769290924072 92.4834040563748 78.6239 79.0000 8.9889 234 108.1121
1010 361.5985 3.3364 G 4.5899 442.5985 453.0000 146.4219 134 13.0619335174561 96.4290851729248 80.8584 81.0000 10.2861 117 3.3364
1012 552.2198 C 5.0823 642.2198 708.0000 214.2088 91 10.7640514373779 126.363491552531 96.2556 90.0000 24.2423 186 5.0952
1013 29.4521 0.2717 G 1.0877 112.4521 112.0000 14.6269 73 9.64087581634521 103.389765148264 84.2056 83.0000 13.5932 186 0.2717
1014 11744.6396 108.3660 G 108.3404 11829.6396 5727.0000 11565.2441 185 15.3476161956787 109.189519701456 88.4909 85.0000 16.1263 228 108.3660
1015 12363.8125 114.0790 G 112.4989 12447.8125 5885.0000 12300.8193 178 15.0544557571411 110.648295268163 88.1696 84.0000 17.7655 232 114.0790
1017 24.5102 0.2262 G 1.1215 101.5102 97.0000 17.3283 98 11.1703834533691 90.5089873981596 77.8655 77.0000 9.0060 123 0.2262
1018 25.3077 0.2335 G 1.1054 102.3077 103.0000 11.8982 65 9.09728336334229 92.5507212368003 78.0165 77.0000 10.3671 188 0.2335
1019 74.1000 0.6837 G 1.6300 152.1000 151.0000 21.2794 80 10.0925302505493 93.311590836107 79.0110 78.0000 10.2077 188 0.6837
1020 16.0417 0.1480 G 1.0250 93.0417 92.0000 11.3596 48 7.81764030456543 90.7757673877646 77.5769 77.0000 9.1838 188 0.1480
1021 11426.0557 105.4265 G 120.5850 11507.0557 5581.0000 11699.6582 201 15.9975357055664 95.4269250025166 81.2719 81.0000 9.6180 236 105.4265
1022 11291.5898 104.1858 G 117.1166 11373.5898 5345.0000 11668.5908 197 15.8375558853149 97.1133881976902 81.7733 82.0000 10.0756 233 104.1858
1024 5.1463 L 0.9047 81.1463 82.0000 8.9893 82 10.2179079055786 89.6907827135321 76.9538 76.0000 9.1272 203 0.0475

Total number of rows: 36227

Table truncated, full table size 4552 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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