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Sample GSM116245 Query DataSets for GSM116245
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30Gy (g_nfsa_30_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10259.2363 81.9363 G 102.1216 10341.2363 4598.0000 10696.3623 207 16.2345485687256 101.263972756937 84.0044 82.0000 12.8426 234 81.9363
1002 1296.2928 10.3530 G 13.7512 1376.2928 1388.0000 858.2884 183 15.2644300460815 100.08519534243 82.1116 80.0000 13.3901 232 10.3530
1003 25.7789 0.2059 G 1.1266 101.7789 101.0000 12.4081 95 10.9980792999268 90.3402903811252 76.7143 76.0000 9.5602 123 0.2059
1004 61.2202 0.4889 G 1.5381 138.2202 139.0000 18.3475 111 11.8882122039795 89.8653520542524 77.4417 77.0000 8.5769 124 0.4889
1005 15.3208 0.1224 G 1.0278 91.3208 92.0000 9.7396 53 8.21472454071045 88.8485444421905 76.8667 76.0000 8.5657 186 0.1224
1006 13.8913 0.1109 G 1.0109 90.8913 91.0000 11.4592 46 7.65303993225098 89.9076539567484 76.9497 77.0000 8.6051 185 0.1109
1007 10723.9717 85.6480 G 117.7455 10801.9717 4292.0000 11209.0645 213 16.4681510925293 91.7400325481568 78.3486 78.0000 9.1600 226 85.6480
1008 12311.8232 98.3295 G 109.0443 12394.8232 9520.0000 10796.1904 177 15.0121088027954 113.667829222409 87.8281 83.0000 20.4452 200 98.3295
1010 394.1641 3.1480 G 3.2937 480.1641 516.0000 134.4941 130 12.8655023574829 145.783640270153 101.8250 86.0000 39.8558 166 3.1480
1012 613.6706 C 4.0566 704.6706 751.0000 203.5185 85 10.4031419754028 173.710571509376 113.2222 91.0000 55.1404 186 4.9011
1013 74.4000 0.5942 G 1.0649 170.4000 159.0000 57.7651 35 6.67558097839355 160.013203882626 106.3605 96.0000 42.6755 178 0.5942
1014 13348.1064 C 64.0485 13440.1064 11678.0000 10524.4395 161 14.3175268173218 209.842491653634 121.3694 92.0000 78.5617 230 106.6059
1015 12353.2373 C 72.2637 12444.2373 9791.0000 11067.5088 175 14.9270534515381 172.205901148774 110.7711 91.0000 54.1373 209 98.6603
1017 23.1017 0.1845 G 1.1054 100.1017 100.0000 11.9280 120 12.3607740402222 90.5541566281756 77.6029 77.0000 9.0361 212 0.1845
1018 29.9785 0.2394 G 1.1422 106.9785 108.0000 12.1168 93 10.8816947937012 93.6594692745185 78.6356 77.0000 11.1063 122 0.2394
1019 86.6579 CL 0.9706 170.6579 173.0000 20.4364 38 6.95579624176025 175.818816433344 104.6484 84.0000 61.2125 188 0.6921
1020 10.1034 L 0.7745 96.1034 99.0000 14.3367 29 6.07650756835938 124.083039180761 93.0879 86.0000 25.3887 188 0.0807
1021 14455.0264 115.4464 G 92.6516 14547.0264 16058.0000 11157.4521 151 13.8657550811768 157.007872265106 107.9083 92.0000 43.3386 124 115.4464
1022 11402.3594 91.0660 G 110.9288 11484.3594 6778.0000 11024.4814 191 15.5945100784302 103.529138208575 85.0918 82.0000 14.3528 204 91.0660
1024 12.8298 L 0.9993 87.8298 89.0000 11.5156 47 7.73577785491943 87.8945255668419 75.5439 75.0000 8.5963 177 0.1025

Total number of rows: 36227

Table truncated, full table size 4569 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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