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Sample GSM116246 Query DataSets for GSM116246
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 4 days after gamma irradiation at 30Gy (g_nfsa_30_4d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 4days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1177.2240 14.1790 G 13.6135 1256.2240 1425.0000 672.1429 127 12.7161874771118 92.2775627138905 78.3250 79.0000 8.8517 124 14.1790
1003 16.4643 0.1983 G 1.0418 92.4643 93.0000 10.3819 56 8.444016456604 88.7567192610521 76.1657 76.0000 8.5045 187 0.1983
1004 53.1412 0.6401 G 1.4535 129.1412 132.0000 20.2619 85 10.4031419754028 88.8463311465278 76.4451 76.0000 8.5642 188 0.6401
1005 4.7097 L 0.9078 81.7097 83.0000 10.2806 31 6.2825493812561 90.0040540730408 77.1073 77.0000 8.6694 183 0.0567
1006 7.8824 L 0.9471 83.8824 82.0000 11.2871 34 6.57952451705933 88.5668120362956 76.0111 76.0000 8.3779 186 0.0949
1010 313.5966 3.7771 G 4.2872 389.5966 421.0000 115.3871 121 12.4121704101563 90.8735231195213 77.3814 76.0000 9.9157 122 3.7771
1012 580.6374 6.9934 G 7.2069 658.6374 722.0000 274.9357 91 10.7640514373779 91.3894146327843 77.2857 78.0000 8.9263 181 6.9934
1013 34.8400 0.4196 G 1.2469 112.8400 111.0000 17.7359 75 9.77204990386963 90.4975643483934 77.9503 78.0000 8.3317 187 0.4196
1017 61.1735 0.7368 G 1.5393 137.1735 139.0000 19.8196 100 11.2837915420532 89.1125149521879 76.2650 76.0000 8.7417 121 0.7368
1018 17.7347 0.2136 G 1.0401 95.7347 95.0000 12.4815 49 7.89865398406982 92.0469926529136 78.4494 78.0000 9.3647 184 0.2136
1019 74.0000 0.8913 G 1.6780 153.0000 160.0000 28.4524 74 9.70668506622314 91.1812861176301 78.3736 79.0000 8.1209 188 0.8913
1020 20.2540 0.2439 G 1.0975 97.2540 96.0000 12.6541 63 8.95623207092285 88.611333555778 77.1538 77.0000 7.7409 188 0.2439
1024 6.1429 L 0.9338 84.1429 86.0000 9.7525 91 10.7640514373779 90.1045156075391 76.8531 78.0000 8.0697 183 0.0740
1026 320.2091 3.8567 G 4.5150 394.2091 422.0000 133.7242 112 11.9416427612305 87.3105863496976 74.0833 74.0000 8.8737 124 3.8567
1027 6.9429 L 0.9367 82.9429 82.0000 10.6689 35 6.67558097839355 88.5469106388058 76.3333 76.0000 8.3646 186 0.0836
1030 49.8585 0.6005 G 1.4055 124.8585 125.0000 17.0036 108 11.7264604568481 88.8328624338952 76.0561 75.0000 9.2219 111 0.6005
1031 81.6881 0.9839 G 1.7705 157.6881 161.0000 21.7819 111 11.8882122039795 89.0628827620773 76.6916 76.0000 8.7086 111 0.9839
1034 186.6566 2.2482 G 2.8826 265.6566 280.0000 68.3881 99 11.2272310256958 92.1598856607837 78.6011 79.0000 8.7733 184 2.2482
1039 49.4950 0.5961 G 1.3996 126.4950 127.0000 16.0369 103 11.4517974853516 90.3772022534736 77.1429 77.0000 8.9181 116 0.5961
1040 6.4833 L 0.9296 84.4833 84.0000 10.7819 60 8.74038791656494 90.8858950999739 77.7768 78.0000 8.5906 116 0.0781

Total number of rows: 36227

Table truncated, full table size 4526 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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