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Sample GSM116251 Query DataSets for GSM116251
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 9 days after gamma irradiation at 30Gy (g_nfsa_30_9d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1272.1517 16.6745 G 15.1542 1347.1517 1652.0000 717.7722 147 13.6808700561523 88.8961300673352 75.1745 75.0000 9.2641 220 16.6745
1003 15.8806 0.2082 G 1.0277 88.8806 89.0000 9.7942 67 9.23618125915527 86.4880306825446 73.6441 73.0000 8.9920 122 0.2082
1004 45.1942 0.5924 G 1.3890 118.1942 117.0000 15.7444 105 11.562445640564 85.0906221040633 73.6387 73.0000 8.0604 123 0.5924
1005 12.9688 L 0.9897 83.9688 84.0000 9.9199 32 6.38307666778564 84.8425558849524 72.3222 71.0000 9.2284 186 0.1700
1006 15.0735 0.1976 G 1.0213 86.0735 87.0000 9.4765 68 9.30485343933105 84.2775891032112 71.7167 71.0000 8.8517 124 0.1976
1010 339.0924 4.4446 G 4.7680 411.0924 456.0000 143.9310 121 12.4121704101563 86.2196787166267 72.9833 72.0000 9.4798 124 4.4446
1012 540.6741 7.0868 G 6.9693 616.6741 714.0000 271.6514 89 10.6451082229614 88.4846106657511 74.7556 76.0000 8.3231 186 7.0868
1013 40.1912 0.5268 G 1.3119 112.1912 111.0000 14.0349 68 9.30485343933105 85.5155906189507 72.0714 72.0000 9.0104 188 0.5268
1017 18.7576 0.2459 G 1.0748 90.7576 92.0000 12.0957 66 9.16699600219727 84.4424848568471 72.2363 72.0000 8.2950 188 0.2459
1018 13.7647 0.1804 G 1.0327 85.7647 87.0000 9.9012 68 9.30485343933105 83.0513987264429 72.6891 72.0000 7.3676 123 0.1804
1019 67.8571 0.8894 G 1.6563 138.8571 138.0000 24.1654 77 9.90148735046387 83.8377224133717 72.1648 71.0000 8.5585 188 0.8894
1020 17.1636 0.2250 G 1.0522 90.1636 89.0000 8.2633 55 8.36828422546387 85.6888424438064 72.9560 73.0000 8.4592 188 0.2250
1024 7.5588 L 0.9601 80.5588 82.0000 9.2202 34 6.57952451705933 83.9107897053583 73.4835 73.0000 7.2739 188 0.0991
1026 356.7100 4.6755 G 5.1642 428.7100 464.0000 178.4830 102 11.396071434021 83.0164380060469 71.8500 72.0000 7.3443 186 4.6755
1027 7.7444 L 0.9428 79.7444 81.0000 10.3415 90 10.7047443389893 84.5787468341995 72.4158 72.0000 8.3858 210 0.1015
1030 57.6395 0.7555 G 1.5553 128.6395 130.0000 18.9343 86 10.4641580581665 82.7084332340675 71.5604 71.0000 7.8056 188 0.7555
1031 18.6949 0.2450 G 1.0650 92.6949 93.0000 11.5704 59 8.66724491119385 87.0378841047498 73.6243 74.0000 8.6919 187 0.2450
1034 191.8721 2.5149 G 3.1547 263.8721 288.0000 74.1888 86 10.4641580581665 83.6441933381646 72.5000 72.0000 7.7628 188 2.5149
1039 49.2727 0.6458 G 1.4178 121.2727 121.0000 17.1006 77 9.90148735046387 85.5354357945305 72.4945 72.0000 9.0236 188 0.6458
1040 8.2564 L 0.9548 82.2564 82.0000 9.8025 39 7.04672574996948 86.1545528921474 73.9890 74.0000 8.1030 188 0.1082

Total number of rows: 36227

Table truncated, full table size 4523 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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