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Sample GSM116257 Query DataSets for GSM116257
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 9 days after gamma irradiation at 50Gy (g_nfsa_50_9d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 840.2015 10.3528 G 10.6503 913.2015 1062.0000 394.3458 131 12.9148902893066 85.7445762970937 73.6050 73.0000 8.4964 123 10.3528
1003 15.7679 0.1943 G 1.0419 89.7679 91.0000 12.0993 56 8.444016456604 86.1549059200912 74.1050 74.0000 8.1033 187 0.1943
1004 46.6442 0.5747 G 1.4155 119.6442 120.0000 16.6612 106 11.617374420166 84.5265940589507 72.8417 73.0000 7.6844 124 0.5747
1005 10.9459 L 0.9690 83.9459 84.0000 9.8061 37 6.86366271972656 86.6351803064337 73.5659 73.0000 9.0901 188 0.1349
1006 14.6809 0.1809 G 1.0253 87.6809 89.0000 9.5652 47 7.73577785491943 85.5213524813704 73.0389 73.0000 8.3476 186 0.1809
1010 251.4492 3.0983 G 3.8310 323.4492 356.0000 107.7007 120 12.3607740402222 84.4298881299892 72.2632 72.0000 8.2866 118 3.0983
1012 510.1047 6.2854 G 6.5601 583.1047 665.0000 278.5594 86 10.4641580581665 88.8861124346225 73.8901 73.0000 10.5907 188 6.2854
1013 35.4203 0.4364 G 1.2589 106.4203 106.0000 14.9156 69 9.37302112579346 84.535783707168 72.4176 71.0000 9.0239 188 0.4364
1017 65.0333 0.8013 G 1.6379 137.0333 136.0000 18.6139 90 10.7047443389893 83.6658301434822 72.1429 72.0000 7.7772 188 0.8013
1018 14.3051 0.1763 G 1.0317 87.3051 88.0000 10.2895 59 8.66724491119385 84.6223232865949 72.6319 73.0000 7.7482 188 0.1763
1019 70.9324 0.8740 G 1.7016 142.9324 145.0000 24.2093 74 9.70668506622314 84.0000355895497 71.7912 72.0000 8.0000 188 0.8740
1020 27.4098 0.3377 G 1.1668 100.4098 98.0000 18.0058 61 8.81292343139648 86.054031345659 72.8736 73.0000 8.7027 188 0.3377
1024 9.5417 L 0.9674 80.5417 83.0000 11.0998 48 7.81764030456543 83.2516472554614 71.9834 71.0000 8.1678 187 0.1176
1026 275.2043 3.3910 G 4.1613 346.2043 383.0000 119.2216 93 10.8816947937012 83.1968846333928 70.7778 71.0000 8.1313 186 3.3910
1027 13.1852 0.1625 G 1.0166 84.1852 85.0000 10.4882 54 8.29185962677002 82.8120278550911 71.3646 71.0000 7.8747 187 0.1625
1030 63.4643 0.7820 G 1.5941 137.4643 137.0000 23.3908 84 10.3417663574219 86.2349005123388 73.1886 74.0000 8.1566 181 0.7820
1031 71.5714 0.8819 G 1.6978 143.5714 145.0000 22.0731 84 10.3417663574219 84.5652733440473 72.8844 72.0000 8.3768 179 0.8819
1034 180.0370 2.2184 G 2.9557 253.0370 271.0000 72.4622 81 10.1554126739502 85.6107291317875 72.5556 73.0000 8.4072 186 2.2184
1039 43.9136 0.5411 G 1.3964 114.9136 114.0000 13.8868 81 10.1554126739502 82.290619706724 71.2737 71.0000 7.5271 185 0.5411
1040 14.2973 0.1762 G 1.0247 85.2973 80.0000 23.0145 37 6.86366271972656 83.239392475358 71.7108 71.0000 8.1596 172 0.1762

Total number of rows: 36227

Table truncated, full table size 4529 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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