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Sample GSM116269 Query DataSets for GSM116269
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50Gy (g_mca4_50_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan "
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 12594.8770 112.8600 G 135.8089 12673.8770 3674.0000 14078.2891 172 14.7985544204712 93.3213922607513 79.7525 79.0000 9.5476 105 112.8600
1002 4951.8237 44.3722 G 52.9299 5031.8237 6297.0000 3624.5281 155 14.04820728302 95.065724135923 80.5079 80.0000 10.0438 197 44.3722
1003 191.4464 1.7155 G 2.8382 272.4464 283.0000 72.7487 114 12.0477924346924 95.9936264281461 80.5417 81.0000 9.9957 124 1.7155
1004 55.8775 0.5007 G 1.4354 136.8775 139.0000 19.7965 100 11.2837915420532 95.3588735513299 81.6250 81.0000 9.5726 124 0.5007
1005 15.8605 0.1421 G 1.0152 95.8605 96.0000 11.9214 43 7.3992772102356 94.4290931500685 80.5549 80.0000 9.6194 188 0.1421
1006 18.2500 0.1635 G 1.0498 99.2500 97.0000 14.4041 48 7.81764030456543 94.5462373220649 80.3132 81.0000 9.0308 188 0.1635
1007 13868.8389 124.2756 G 139.4553 13952.8389 7829.0000 14446.1328 170 14.7122640609741 100.052405079884 83.7750 84.0000 10.7016 124 124.2756
1008 12838.7803 115.0455 G 132.1564 12921.7803 4410.0000 14111.7607 166 14.5381488800049 97.7764565034588 82.6583 83.0000 9.8510 124 115.0455
1010 431.5948 3.8674 G 5.2571 513.5948 578.0000 179.5430 118 12.2573356628418 97.6948996471837 82.6417 82.0000 10.4633 124 3.8674
1012 559.0114 5.0092 G 6.7302 638.0114 736.0000 282.2362 88 10.5851345062256 94.798338387684 79.9725 79.0000 10.5322 188 5.0092
1013 28.6000 0.2563 G 1.1390 106.6000 106.0000 14.5536 60 8.74038791656494 93.5881008574966 78.2994 78.0000 10.3921 183 0.2563
1014 13398.2061 120.0584 G 140.9854 13477.2061 5840.0000 14151.0332 157 14.1385507583618 95.5929217427688 80.5294 79.0000 11.0620 123 120.0584
1015 13531.7275 121.2549 G 135.3638 13615.7275 6276.0000 14088.5293 160 14.2729930877686 100.586213881573 84.6807 84.0000 11.0575 123 121.2549
1017 35.2237 0.3156 G 1.2244 113.2237 114.0000 10.9696 76 9.83698177337646 92.4742560230415 78.0611 78.0000 9.6495 186 0.3156
1018 147.5816 1.3224 G 2.3949 228.5816 233.0000 44.4329 98 11.1703834533691 95.4462580927252 80.5495 81.0000 9.6308 188 1.3224
1019 226.3636 2.0284 G 3.1623 308.3636 330.0000 101.0058 77 9.90148735046387 97.5113743841789 81.9286 82.0000 10.3409 188 2.0284
1020 35.1270 0.3148 G 1.2053 116.1270 116.0000 16.0806 63 8.95623207092285 96.3502532975064 80.6758 81.0000 10.2335 188 0.3148
1021 12555.0537 112.5031 G 134.3446 12635.0537 4100.0000 14060.7090 170 14.7122640609741 94.0495592549643 80.7333 80.0000 9.3664 124 112.5031
1022 12007.0361 107.5924 G 126.0619 12089.0361 3409.0000 13977.7559 170 14.7122640609741 95.8976158714185 82.7417 82.0000 9.2651 124 107.5924
1024 5.9310 L 0.9340 85.9310 87.0000 9.4611 29 6.07650756835938 91.9998516958522 80.2564 80.0000 7.9999 162 0.0531

Total number of rows: 36227

Table truncated, full table size 4568 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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