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Sample GSM116270 Query DataSets for GSM116270
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50Gy (g_mca4_50_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan "
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 13586.0186 119.4375 G 128.0632 13673.0186 6851.0000 14258.2627 168 14.6254653930664 106.767764741656 88.7273 87.0000 13.1785 103 119.4375
1002 5002.5459 43.9784 G 46.3266 5085.5459 6128.0000 3156.2407 143 13.4934520721436 109.775893355248 87.6993 83.0000 17.8506 147 43.9784
1003 178.3047 I 2.2526 263.3047 264.0000 96.9275 130 12.8655023574829 116.891351512577 90.0000 85.0000 21.2609 160 1.5675
1004 95.6471 0.8409 G 1.5728 175.6471 153.0000 93.9296 104 11.5072546005249 111.680612117359 84.6083 80.0000 21.1204 124 0.8409
1005 57.6765 0.5070 G 1.3418 138.6765 128.0000 47.2448 68 9.30485343933105 103.354213925078 83.5495 81.0000 14.9028 188 0.5070
1006 58.0000 0.5099 G 1.1824 147.0000 126.0000 74.8450 45 7.56939744949341 124.327334603232 92.8187 89.0000 23.5516 188 0.5099
1007 13976.5273 122.8706 G 127.3492 14063.5273 7092.0000 14598.5781 167 14.5818719863892 110.432831046037 89.7000 87.0000 15.6219 124 122.8706
1008 13756.0752 120.9325 G 138.3678 13837.0752 6570.0000 14533.8770 162 14.3619222640991 100.002101879396 82.1083 81.0000 12.6681 124 120.9325
1010 463.9259 4.0785 G 4.1762 545.9259 582.0000 162.1603 110 11.8345403671265 130.721707068136 85.9652 82.0000 32.4811 119 4.0785
1012 544.0909 4.7832 G 6.1634 623.0909 695.0000 263.0847 88 10.5851345062256 101.09450930666 81.1602 79.0000 14.7297 187 4.7832
1013 33.3455 0.2931 G 1.1379 114.3455 104.0000 39.7603 55 8.36828422546387 100.484337440777 82.2712 81.0000 12.9896 183 0.2931
1014 14351.1992 126.1644 G 142.6291 14435.1992 9011.0000 13971.2080 163 14.4061803817749 101.207927857146 84.8333 84.0000 11.4719 124 126.1644
1015 14329.3906 125.9727 G 133.0731 14410.3906 8602.0000 14180.5000 148 13.7273254394531 108.289266925656 84.8067 81.0000 18.1928 123 125.9727
1017 56.4474 0.4962 G 1.4183 138.4474 120.0000 84.1096 76 9.83698177337646 97.617800053004 82.7912 82.0000 10.4119 188 0.4962
1018 153.4255 1.3488 G 2.2532 235.4255 243.0000 42.0955 94 10.9400415420532 104.484084224151 84.5879 82.0000 14.9894 188 1.3488
1019 197.4857 1.7361 G 2.2012 281.4857 297.0000 69.6614 70 9.44069766998291 127.877816465832 89.8407 84.0000 29.2519 188 1.7361
1020 44.1800 0.3884 G 1.1529 126.1800 124.0000 18.8294 50 7.97884559631348 109.449889668551 85.4945 82.0000 18.2999 188 0.3884
1021 14427.9727 126.8393 G 130.0323 14513.9727 7337.0000 14235.6074 149 13.7736234664917 111.618221323299 86.9250 86.0000 17.0788 124 126.8393
1022 15330.8652 134.7768 G 127.2567 15417.8652 12931.0000 14191.7734 136 13.1590490341187 121.155671560255 91.2000 87.0000 22.7704 124 134.7768
1024 13.7568 L 0.9585 96.7568 98.0000 14.3440 37 6.86366271972656 100.945401360358 84.4578 83.0000 11.9636 172 0.1209

Total number of rows: 36227

Table truncated, full table size 4570 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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