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Sample GSM116273 Query DataSets for GSM116273
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 25 days after gamma irradiation at 50Gy (g_mca4_50_25d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan "
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 25days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6195.9541 59.5378 G 71.5084 6271.9541 2618.0000 6289.6895 177 15.0121088027954 87.7093709473585 75.2500 76.0000 7.8062 124 59.5378
1002 3185.2192 30.6072 G 37.1619 3259.2192 3900.0000 1945.8701 157 14.1385507583618 87.7032465048186 73.9633 74.0000 9.1355 226 30.6072
1003 79.7593 0.7664 G 1.7813 151.7593 156.0000 27.1351 110 11.8345403671265 85.1945388987788 72.6302 72.0000 8.7964 123 0.7664
1004 45.5385 0.4376 G 1.3745 119.5385 121.0000 16.4041 106 11.617374420166 86.9675303190421 73.7833 74.0000 8.6450 124 0.4376
1005 12.5000 0.1201 G 1.0059 87.5000 90.0000 10.5712 40 7.13649654388428 86.9830029553946 74.4862 75.0000 7.9887 187 0.1201
1006 14.8197 0.1424 G 1.0168 88.8197 90.0000 11.2883 61 8.81292343139648 87.3534009073307 74.2912 74.0000 8.9023 188 0.1424
1007 6261.5117 60.1677 G 72.9258 6336.5117 3929.0000 6230.7505 172 14.7985544204712 86.8897981866679 74.1083 75.0000 7.9265 124 60.1677
1008 6003.8535 57.6919 G 69.9336 6078.8535 3662.0000 5993.2422 159 14.2283201217651 86.9231872263084 75.5083 75.0000 7.9488 124 57.6919
1010 242.7632 2.3327 G 3.6360 316.7632 334.0000 86.7824 116 12.1530151367188 87.1178611485504 74.8559 74.0000 8.7452 122 2.3327
1012 430.5747 4.1375 G 5.8905 504.5747 551.0000 236.0699 87 10.5248203277588 85.6588811086916 73.3462 74.0000 7.7726 188 4.1375
1013 23.8939 0.2296 G 1.1243 97.8939 98.0000 10.9754 66 9.16699600219727 87.07033548095 73.0495 74.0000 8.7136 188 0.2296
1014 5967.5376 57.3429 G 71.3840 6040.5376 4068.0000 5994.7280 162 14.3619222640991 84.6203262692536 72.5500 73.0000 7.7469 124 57.3429
1015 6411.6084 61.6100 G 76.2537 6483.6084 3106.0000 6430.2368 173 14.8415107727051 85.0268461747803 73.0583 72.0000 8.6846 124 61.6100
1017 85.9454 0.8259 G 1.8880 157.9454 163.0000 27.4706 112 11.9416427612305 83.6581967851253 72.0756 72.0000 7.7721 123 0.8259
1018 63.2736 0.6080 G 1.5786 137.2736 138.0000 22.4174 108 11.7264604568481 86.9606119065502 74.0417 74.0000 8.6404 124 0.6080
1019 131.8272 1.2667 G 2.4416 203.8272 210.0000 48.5516 81 10.1554126739502 83.4821521914242 72.1593 72.0000 7.6548 188 1.2667
1020 20.4717 0.1967 G 1.0936 92.4717 90.0000 10.7941 53 8.21472454071045 84.5573738218704 72.3462 72.0000 8.3716 188 0.1967
1021 6327.3120 60.8000 G 74.5771 6401.3120 3215.0000 6275.1646 175 14.9270534515381 85.8347737973754 74.0167 74.0000 7.8898 124 60.8000
1022 5890.1914 56.5997 G 69.2497 5964.1914 2932.0000 5974.9287 169 14.6689291000366 86.1258967057943 74.9083 74.0000 8.0839 124 56.5997
1024 1.6800 L 0.8811 75.6800 75.0000 8.9475 50 7.97884559631348 85.8909147929056 73.7248 74.0000 7.9273 113 0.0161

Total number of rows: 36227

Table truncated, full table size 4545 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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