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Sample GSM116279 Query DataSets for GSM116279
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, no irradiation (g_scc7_0_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA"
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6695.6753 136.8792 G 66.8329 6784.6753 3188.0000 6928.1865 156 14.093451499939 101.51696047626 89.6833 89.0000 8.3446 124 136.8792
1002 574.6218 11.7470 G 6.4549 663.6218 749.0000 254.8940 121 12.4121704101563 102.808397674342 89.0833 89.0000 9.2056 124 11.7470
1003 16.0000 0.3271 G 1.0294 105.0000 106.0000 11.6060 83 10.2800235748291 101.997859304942 89.2833 89.0000 8.6652 124 0.3271
1004 32.1646 0.6575 G 1.1651 122.1646 121.0000 14.8660 79 10.0292530059814 104.852328749856 89.6022 90.0000 9.9015 187 0.6575
1005 11.3846 L 0.9464 101.3846 101.0000 12.2613 39 7.04672574996948 107.124083704017 91.3427 90.0000 11.4161 184 0.2327
1006 16.0000 0.3271 G 1.0248 103.0000 103.0000 10.4652 50 7.97884559631348 100.503832521107 87.3022 87.0000 9.0026 188 0.3271
1007 7072.1553 144.5756 G 70.6037 7160.1553 3781.0000 7018.2612 150 13.8197660446167 101.413327855441 89.3583 88.0000 8.9422 124 144.5756
1008 7220.8120 147.6145 G 70.9879 7309.8120 3599.0000 7102.6572 151 13.8657550811768 102.972625801115 89.2500 89.0000 9.3151 124 147.6145
1010 425.6693 8.7019 G 5.1850 510.6693 580.0000 182.1807 126 12.6660251617432 98.4905277870433 84.1167 85.0000 8.9937 124 8.7019
1012 286.5176 5.8573 G 3.7482 371.5176 415.0000 126.0091 85 10.4031419754028 99.1202353353367 84.5989 85.0000 9.4135 188 5.8573
1013 23.9500 0.4896 G 1.1048 107.9500 107.0000 12.0988 60 8.74038791656494 97.7087682688002 84.7967 84.0000 9.1392 188 0.4896
1014 6950.8276 142.0953 G 70.4744 7036.8276 3407.0000 6868.7905 147 13.6808700561523 99.8493673154005 85.1880 86.0000 9.2329 121 142.0953
1015 6446.9937 131.7954 G 68.1616 6529.9937 3698.0000 6599.1807 158 14.1835060119629 95.8016404154967 83.8833 83.0000 8.5344 124 131.7954
1017 27.8158 0.5686 G 1.1512 111.8158 114.0000 10.4450 76 9.83698177337646 97.1256592112928 84.3571 84.0000 8.7504 188 0.5686
1018 21.8302 0.4463 G 1.0797 103.8302 104.0000 10.3390 53 8.21472454071045 96.1700844031219 82.8901 82.0000 9.4467 188 0.4463
1019 65.9155 1.3475 G 1.5438 149.9155 153.0000 24.6558 71 9.50789165496826 97.1093228035367 83.9613 84.0000 8.7395 187 1.3475
1020 8.3125 L 0.9587 91.3125 92.0000 13.9495 32 6.38307666778564 95.2471732569965 83.1921 83.0000 8.1648 183 0.1699
1021 6919.8096 141.4612 G 72.1897 7004.8096 3876.0000 6864.0884 149 13.7736234664917 97.033390030021 84.9000 85.0000 8.0223 124 141.4612
1022 7055.0996 144.2269 G 70.8756 7142.0996 3434.0000 7138.3701 163 14.4061803817749 100.769442829474 87.3667 87.0000 9.1796 124 144.2269
1024 14.9474 0.3056 G 1.0099 100.9474 103.0000 11.0094 38 6.95579624176025 99.9545642975247 86.2229 86.0000 9.3030 172 0.3056

Total number of rows: 36227

Table truncated, full table size 4509 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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