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Sample GSM116282 Query DataSets for GSM116282
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 8 days after gamma irradiation at 30Gy (g_scc7_30_8d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA"
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 8days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5868.7920 71.6690 G 66.3921 5945.7920 4127.0000 5689.5449 151 13.8657550811768 89.5557802512693 77.1333 77.0000 8.3705 124 71.6690
1002 853.8828 10.4275 G 10.1594 932.8828 1122.0000 432.6236 130 12.8655023574829 91.8246317739425 78.7917 79.0000 8.5498 124 10.4275
1003 21.1149 0.2579 G 1.0898 98.1149 98.0000 11.6001 87 10.5248203277588 90.0326032547247 76.9417 77.0000 8.6884 124 0.2579
1004 44.2524 0.5404 G 1.3223 120.2524 120.0000 17.1281 105 11.562445640564 90.9452690495654 76.8583 76.0000 9.9635 124 0.5404
1005 20.2500 0.2473 G 1.0756 98.2500 96.0000 20.5938 48 7.81764030456543 91.3433208207126 78.3611 78.0000 8.8955 186 0.2473
1006 13.0484 0.1593 G 1.0025 89.0484 89.0000 10.5638 62 8.88486671447754 88.8303286876278 75.3083 76.0000 8.5536 124 0.1593
1007 6397.7715 78.1288 G 69.7885 6475.7715 5598.0000 5856.2109 142 13.4461898803711 92.7914169349148 78.3917 78.0000 9.8609 124 78.1288
1008 6877.5859 83.9882 G 71.9443 6958.5859 6410.0000 6024.1924 142 13.4461898803711 96.7218344656377 79.5299 81.0000 10.4812 121 83.9882
1010 518.7064 6.3344 G 6.6319 594.7064 675.0000 221.5645 128 12.7661533355713 89.6731462860003 76.7750 76.0000 9.1154 124 6.3344
1012 377.6631 4.6120 G 5.0682 454.6631 517.0000 187.9382 95 10.9980792999268 89.7086675149887 77.8407 77.0000 8.4724 188 4.6120
1013 31.9118 0.3897 G 1.2242 108.9118 109.0000 12.0327 68 9.30485343933105 88.967768617495 76.6813 77.0000 7.9785 188 0.3897
1014 6320.8242 77.1891 G 70.7114 6398.8242 4894.0000 6049.3994 150 13.8197660446167 90.4920928754148 78.2917 78.0000 8.3281 124 77.1891
1015 6409.8623 78.2764 G 70.6117 6486.8623 5129.0000 5810.6362 147 13.6808700561523 91.86665555942 77.8917 77.0000 9.9111 124 78.2764
1017 36.1111 0.4410 G 1.2989 110.1111 110.0000 15.0339 99 11.2272310256958 84.7756529282684 74.3243 74.0000 7.1838 115 0.4410
1018 29.7000 0.3627 G 1.1696 105.7000 105.0000 12.8037 80 10.0925302505493 90.3751317390781 77.0939 76.0000 9.5834 187 0.3627
1019 89.7368 1.0959 G 1.8768 164.7368 166.0000 31.6545 76 9.83698177337646 87.7737621324551 75.3352 75.0000 8.5158 188 1.0959
1020 10.3415 L 0.9897 87.3415 89.0000 12.6349 41 7.22515201568604 88.2544359649882 77.0056 77.0000 7.5030 186 0.1263
1021 6386.8569 77.9955 G 71.5634 6462.8569 4138.0000 6035.0771 149 13.7736234664917 90.3095573486227 75.7478 76.0000 9.5397 119 77.9955
1022 5986.0576 73.1010 G 66.6762 6063.0576 3775.0000 5745.7603 141 13.3987598419189 90.9329117014964 78.1261 77.0000 9.2886 123 73.1010
1024 11.4054 L 0.9974 85.4054 86.0000 12.7967 74 9.70668506622314 85.6314198095803 74.5667 74.0000 7.7543 124 0.1393

Total number of rows: 36227

Table truncated, full table size 4532 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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