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Sample GSM116284 Query DataSets for GSM116284
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50Gy (g_scc7_50_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA"
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6791.8311 141.1892 G 70.0174 6875.8311 4095.0000 6612.1133 144 13.5405502319336 98.2017547606491 84.0417 84.0000 9.4678 124 141.1892
1002 531.9830 11.0589 G 6.4238 615.9830 740.0000 280.8705 120 12.3607740402222 95.8910398841418 84.0833 84.0000 7.9274 124 11.0589
1003 14.3421 L 0.9979 98.3421 99.0000 11.0995 76 9.83698177337646 98.5477415253556 83.6500 84.0000 9.6985 124 0.2981
1004 26.3766 0.5483 G 1.1526 108.3766 109.0000 17.3700 77 9.90148735046387 94.0308040085569 81.6758 82.0000 8.0205 188 0.5483
1005 12.8095 0.2663 G 1.0028 94.8095 98.0000 11.2234 42 7.3127326965332 94.5482058343566 81.0495 82.0000 8.3655 188 0.2663
1006 12.8889 L 0.9870 96.8889 95.0000 12.9953 36 6.7702751159668 98.1650201816353 84.1988 84.0000 9.4433 177 0.2679
1007 6430.8267 133.6846 G 67.9533 6512.8267 3385.0000 6595.6387 152 13.9115924835205 95.8426618293014 82.5500 82.0000 9.2284 124 133.6846
1008 6427.2866 133.6110 G 68.4598 6510.2866 2868.0000 6801.8506 152 13.9115924835205 95.0964244627511 83.7250 83.0000 8.0643 124 133.6110
1010 431.3026 8.9660 G 5.2745 514.3026 565.0000 186.8027 121 12.4121704101563 97.506635531677 83.6417 83.0000 9.6711 124 8.9660
1012 268.6905 5.5856 G 3.6042 351.6905 390.0000 139.5758 84 10.3417663574219 97.5790688842497 83.7418 83.0000 9.7194 188 5.5856
1013 22.3860 0.4654 G 1.0845 105.3860 105.0000 10.0991 57 8.51907634735107 97.1776213530974 83.6154 83.0000 9.4518 188 0.4654
1014 6994.8906 145.4104 G 70.0812 7080.8906 5117.0000 6654.1831 148 13.7273254394531 101.038365351998 85.5575 86.0000 10.0256 117 145.4104
1015 6564.0000 136.4530 G 70.8152 6644.0000 3363.0000 6590.5640 152 13.9115924835205 93.8216340136651 80.7373 80.0000 9.2144 122 136.4530
1017 21.7391 0.4519 G 1.0924 102.7391 101.0000 14.2754 69 9.37302112579346 94.0455047415686 81.1264 81.0000 8.6970 188 0.4519
1018 15.6364 0.3250 G 1.0262 97.6364 98.0000 9.5958 66 9.16699600219727 95.1390061686843 81.8750 82.0000 8.7593 124 0.3250
1019 51.3731 1.0679 G 1.4039 132.3731 132.0000 18.3838 67 9.23618125915527 94.2909051601561 81.0275 81.0000 8.8606 188 1.0679
1020 10.5714 L 0.9711 92.5714 95.0000 10.7041 42 7.3127326965332 95.3286076514995 81.2088 82.0000 8.8857 188 0.2198
1021 6834.3379 142.0728 G 69.8606 6918.3379 4033.0000 6684.8613 147 13.6808700561523 99.0305628412979 84.3455 84.0000 10.0204 114 142.0728
1022 6731.9937 139.9453 G 71.2906 6813.9937 2384.0000 6919.2163 164 14.4503040313721 95.5804784718489 82.2000 82.0000 9.0537 119 139.9453
1024 16.5106 0.3432 G 1.0291 98.5106 99.0000 11.1658 47 7.73577785491943 95.7250533580687 82.3615 82.0000 9.1500 134 0.3432

Total number of rows: 36227

Table truncated, full table size 4510 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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