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Sample GSM116291 Query DataSets for GSM116291
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 70Gy (g_scc7_70_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA"
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 70Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1379.4384 11.8801 G 16.6633 1454.4384 1686.0000 754.8644 148 13.7273254394531 87.2837251180093 75.2331 75.0000 8.1892 169 11.8801
1003 24.3579 0.2098 G 1.1151 100.3579 99.0000 12.9517 95 10.9980792999268 89.9963995583686 77.1356 76.0000 9.3309 122 0.2098
1004 62.4775 0.5381 G 1.5566 138.4775 137.0000 22.9892 113 11.9948348999023 88.9618126123957 77.7966 76.0000 8.6412 122 0.5381
1005 15.7222 0.1354 G 1.0211 91.7222 93.0000 13.6020 54 8.29185962677002 89.826178301906 76.5198 76.0000 9.2175 183 0.1354
1006 11.2340 L 0.9715 87.2340 89.0000 9.2557 47 7.73577785491943 89.7968260314189 76.9000 76.0000 9.1979 186 0.0968
1010 652.7172 5.6214 G 7.9789 731.7172 838.0000 330.3970 147 13.6808700561523 91.706123932053 78.9061 79.0000 8.4707 187 5.6214
1012 609.0686 5.2455 G 7.5655 688.0686 786.0000 325.4460 104 11.5072546005249 90.9480359046295 78.7363 79.0000 7.9654 188 5.2455
1013 36.4384 0.3138 G 1.2422 116.4384 114.0000 20.2275 73 9.64087581634521 93.7356283993062 80.1899 80.0000 9.1571 185 0.3138
1017 11.4182 L 0.9836 89.4182 88.0000 11.7793 55 8.36828422546387 90.9101693540988 78.2000 78.0000 8.6068 124 0.0983
1018 33.9271 0.2922 G 1.2270 112.9271 111.0000 15.5357 96 11.0558128356934 92.0381909973478 78.6167 79.0000 8.6921 124 0.2922
1019 139.3095 1.1998 G 2.4189 216.3095 228.0000 49.5583 84 10.3417663574219 89.4236640555505 76.8516 77.0000 8.2824 188 1.1998
1020 14.5909 0.1257 G 1.0133 89.5909 89.0000 7.3216 44 7.48482084274292 88.4137077514911 75.4333 75.0000 8.9425 186 0.1257
1024 9.4324 L 0.9673 85.4324 84.0000 12.6374 37 6.86366271972656 88.3208144463466 77.3056 76.0000 8.2139 186 0.0812
1026 560.2703 4.8252 G 6.7794 640.2703 718.0000 281.9273 113 11.9948348999023 94.4433356823235 79.5333 80.0000 9.6289 124 4.8252
1027 14.8966 0.1283 G 1.0280 91.8966 92.0000 10.9807 58 8.59348011016846 89.3959601101904 77.2418 77.0000 8.2640 188 0.1283
1030 42.4950 0.3660 G 1.3295 119.4950 120.0000 15.7560 103 11.4517974853516 89.8783715469938 77.2333 77.0000 8.5856 124 0.3660
1031 31.1585 0.2683 G 1.2175 109.1585 109.0000 12.2489 82 10.2179079055786 89.6579483133915 78.8343 78.0000 7.7720 187 0.2683
1034 250.9604 2.1613 G 3.6081 329.9604 347.0000 104.3388 103 11.4517974853516 91.4499449927548 79.2473 79.0000 8.3000 188 2.1613
1039 75.0606 0.6464 G 1.6739 154.0606 153.0000 36.6242 99 11.2272310256958 92.0396704799964 78.9006 79.0000 8.6931 187 0.6464
1040 16.3095 0.1405 G 1.0403 93.3095 94.0000 10.2620 42 7.3127326965332 89.6985944332433 77.4942 77.0000 8.4657 178 0.1405

Total number of rows: 36227

Table truncated, full table size 4559 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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