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Sample GSM1166082 Query DataSets for GSM1166082
Status Public on May 14, 2014
Title ABRF-ILMN-N-AR-1
Sample type SRA
 
Source name ABRF-ILMN-N-AR
Organism Homo sapiens
Characteristics tissue: Pooled tumor
reference rna: Agilent Universal Human Reference RNA
reference rna cat. #: #740000
Extracted molecule total RNA
Extraction protocol NA
Rnase, RiboDep; exposure to 1 ng/ul RNase A for a sufficient time period to result in a RIN of 3, with the RNase then neutralized with 10 ul RNase Inhibitor (RiboLock EO0381, Thermo Scientific)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Pure Human Reference RNA Sample from Agilent, Inc.
Data processing STAR Aligner v2.3.0 Long
Read counts were calculated using the Rmake pipeline (http://physiology.med.cornell.edu/faculty/mason/lab/r-make/) with Gencode v12 annotation.
Genome_build: hg19
Supplementary_files_format_and_content: Counts table
 
Submission date Jun 17, 2013
Last update date May 15, 2019
Contact name Christopher E Mason
E-mail(s) chm2042@med.cornell.edu
Organization name Weill Cornell Medical College
Department Physiology and Biophysics
Lab Christopher Mason Lab
Street address 1305 York Ave
City New York
ZIP/Postal code 10065
Country USA
 
Platform ID GPL16791
Series (2)
GSE46876 The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq.
GSE48035 The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500]
Relations
BioSample SAMN02205226
SRA SRX307070

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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