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Sample GSM1166117 Query DataSets for GSM1166117
Status Public on May 14, 2014
Title ABRF-ILMN-RNA-C-1
Sample type SRA
 
Source name ABRF-ILMN-RNA-C
Organism Homo sapiens
Characteristics tissue: Pooled tumor
reference rna: Agilent Universal Human Reference RNA
reference rna cat. #: #740000
reference rna 2: FirstChoice® Human Brain Reference Total RNA
reference rna 2 cat. #: #6050
reference rna 2 lot #: 105P055201A
Extracted molecule polyA RNA
Extraction protocol NA
PolyA; RNA libraries were prepared for sequencing using standard unstranded PolyA Illumina protocols with TruSeq RNA Sample Preparation Kit v2
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Agilent Universal Human Reference RNA, Catalog #740000 and FirstChoice® Human Brain Reference Total RNA, Lot #105P055201A, Cat #6050
Pooled RNA Sample of 3/4 ABRF Sample A and 1/4 ABRF Sample B
Data processing STAR Aligner v2.3.0 Long
Read counts were calculated using the Rmake pipeline (http://physiology.med.cornell.edu/faculty/mason/lab/r-make/) with Gencode v12 annotation.
Genome_build: hg19
Supplementary_files_format_and_content: Counts table
 
Submission date Jun 17, 2013
Last update date May 15, 2019
Contact name Christopher E Mason
E-mail(s) chm2042@med.cornell.edu
Organization name Weill Cornell Medical College
Department Physiology and Biophysics
Lab Christopher Mason Lab
Street address 1305 York Ave
City New York
ZIP/Postal code 10065
Country USA
 
Platform ID GPL16791
Series (2)
GSE46876 The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq.
GSE48035 The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500]
Relations
BioSample SAMN02205263
SRA SRX307105

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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