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Status |
Public on Jul 07, 2006 |
Title |
Ileum_Germ-free_rep1_9771 |
Sample type |
RNA |
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Source name |
Ileum of adult germ-free mouse
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Organism |
Mus musculus |
Characteristics |
Strain: NMRI, Age: Adult, Tissue: Ileum, Microbial colonization state: Germ-free, Days post-colonization: N/A, Replicate: 1 of 5
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Extracted molecule |
total RNA |
Label |
Biotin
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Description |
Ileum of adult germ-free mouse
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Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
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Submission date |
Jun 27, 2006 |
Last update date |
Aug 28, 2018 |
Contact name |
John F Rawls |
E-mail(s) |
jfrawls@med.unc.edu
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Phone |
919-966-8340
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Fax |
919 966-6927
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Organization name |
University of North Carolina at Chapel Hill
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Department |
Department of Cell and Molecular Physiology
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Street address |
111 Mason Farm Rd.
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City |
Chapel Hill |
State/province |
NC |
ZIP/Postal code |
27599-7545 |
Country |
USA |
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Platform ID |
GPL1261 |
Series (1) |
GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
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Relations |
Reanalyzed by |
GSE119085 |
Data table header descriptions |
ID_REF |
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Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
Data table |
ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
1415670_at |
4505.7 |
P |
748.397582 |
1415671_at |
9040.2 |
P |
1384.184096 |
1415672_at |
8692.8 |
P |
1277.996312 |
1415673_at |
582.1 |
P |
82.436342 |
1415674_a_at |
3614.5 |
P |
793.846309 |
1415675_at |
3299.7 |
P |
675.610605 |
1415676_a_at |
11564.8 |
P |
2670.943686 |
1415677_at |
3242.7 |
P |
677.63024 |
1415678_at |
12031.2 |
P |
2670.76836 |
1415679_at |
11627.7 |
P |
2278.082311 |
1415680_at |
3023.3 |
P |
504.083629 |
1415681_at |
5536.2 |
P |
1189.152519 |
1415682_at |
2419.3 |
P |
406.630824 |
1415683_at |
12403.9 |
P |
2244.832534 |
1415684_at |
3324.9 |
P |
504.826407 |
1415685_at |
3658.3 |
P |
534.952586 |
1415686_at |
4547.1 |
P |
970.078043 |
1415687_a_at |
27196.8 |
P |
5041.13315 |
1415688_at |
8682.9 |
P |
1680.860701 |
1415689_s_at |
2536.8 |
P |
427.069183 |
Total number of rows: 45101
Table truncated, full table size 1314 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM116743.CEL.gz |
6.5 Mb |
(ftp)(http) |
CEL |
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