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| Status |
Public on Jul 07, 2006 |
| Title |
Ileum_Germ-free_rep4_9774 |
| Sample type |
RNA |
| |
|
| Source name |
Ileum of adult germ-free mouse
|
| Organism |
Mus musculus |
| Characteristics |
Strain: NMRI,
Age: Adult,
Tissue: Ileum,
Microbial colonization state: Germ-free,
Days post-colonization: N/A,
Replicate: 4 of 5
|
| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
|
| Description |
Ileum of adult germ-free mouse
|
| Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
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| |
|
| Submission date |
Jun 27, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
John F Rawls |
| E-mail(s) |
jfrawls@med.unc.edu
|
| Phone |
919-966-8340
|
| Fax |
919 966-6927
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Cell and Molecular Physiology
|
| Street address |
111 Mason Farm Rd.
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-7545 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
| VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
| Data table |
| ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
| 1415670_at |
4723.1 |
P |
722.298347 |
| 1415671_at |
8751.3 |
P |
1395.492972 |
| 1415672_at |
7348.1 |
P |
1204.476528 |
| 1415673_at |
490.8 |
P |
83.231146 |
| 1415674_a_at |
3894 |
P |
926.963387 |
| 1415675_at |
3865.9 |
P |
734.145715 |
| 1415676_a_at |
12142.4 |
P |
2410.405201 |
| 1415677_at |
3283.2 |
P |
722.368672 |
| 1415678_at |
14218.1 |
P |
2597.361898 |
| 1415679_at |
17601.1 |
P |
3038.799129 |
| 1415680_at |
2846.2 |
P |
507.51803 |
| 1415681_at |
6381.6 |
P |
1348.762934 |
| 1415682_at |
1994.4 |
P |
384.618612 |
| 1415683_at |
12160.1 |
P |
2119.393511 |
| 1415684_at |
2445.8 |
P |
525.390723 |
| 1415685_at |
2520.8 |
P |
400.037989 |
| 1415686_at |
4008.6 |
P |
938.481875 |
| 1415687_a_at |
28355.7 |
P |
4356.017566 |
| 1415688_at |
8547.8 |
P |
1533.819547 |
| 1415689_s_at |
1902.6 |
P |
413.78469 |
Total number of rows: 45101
Table truncated, full table size 1314 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM116746.CEL.gz |
6.2 Mb |
(ftp)(http) |
CEL |
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