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Sample GSM116753 Query DataSets for GSM116753
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, no irradiation (g_nrs1_0_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 28, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 11797.4316 91.5886 G 106.3140 11877.4316 9082.0000 10701.3428 134 13.0619335174561 111.720333806394 84.4874 80.0000 21.1469 123 91.5886
1002 2707.0356 21.0159 G 30.0800 2787.0356 3042.0000 1847.5824 142 13.4461898803711 92.6541988849102 80.0807 80.0000 8.4361 231 21.0159
1003 23.7353 0.1843 G 1.1024 103.7353 104.0000 13.1726 68 9.30485343933105 94.0978171270967 81.3352 80.0000 9.3985 188 0.1843
1004 67.2143 0.5218 G 1.5579 147.2143 147.0000 21.4959 84 10.3417663574219 94.4935643568523 80.1099 80.0000 9.6624 188 0.5218
1005 270.7143 2.1017 G 3.7035 351.7143 408.0000 152.6759 84 10.3417663574219 94.9680696827208 80.7033 81.0000 9.3120 188 2.1017
1006 18.2368 0.1416 G 1.0534 99.2368 98.0000 16.6203 38 6.95579624176025 94.210093324085 80.8132 81.0000 8.8067 188 0.1416
1007 11054.5576 85.8213 G 113.3416 11136.5576 7069.0000 10828.3291 142 13.4461898803711 98.2565383379928 82.6667 82.0000 10.8377 124 85.8213
1008 11145.3418 86.5261 G 112.0236 11229.3418 7764.0000 11187.8633 151 13.8657550811768 100.240839710253 84.7333 84.0000 10.8272 124 86.5261
1010 923.4882 7.1694 G 10.6602 1004.4882 1127.0000 481.5497 129 12.8159236907959 94.2282604397608 80.1271 81.0000 8.8188 122 7.1694
1012 905.6667 7.0311 G 9.5144 993.6667 1088.0000 464.9269 93 10.8816947937012 104.43801427903 88.2363 88.0000 10.9587 188 7.0311
1013 33.4118 0.2594 G 1.1582 124.4118 122.0000 19.4000 68 9.30485343933105 107.416379275475 91.1209 91.0000 10.9442 188 0.2594
1014 14481.0938 C 71.7623 14622.0938 16250.0000 10940.1777 119 12.3091630935669 203.7572565942 141.9083 141.0000 41.8382 124 112.4230
1015 11296.8662 C 98.8046 11393.8662 5737.0000 11121.1055 144 13.5405502319336 115.317168211676 97.6750 97.0000 12.2114 124 87.7025
1017 72.5781 C 1.0423 180.5781 182.0000 26.9883 64 9.02703380584717 173.245148892788 120.2308 108.0000 43.4968 188 0.5635
1018 49.2963 C 1.0380 146.2963 147.0000 15.5309 54 8.29185962677002 140.947257257727 104.8297 97.0000 29.2982 188 0.3827
1019 537.8706 4.1757 G 5.6658 625.8706 723.0000 253.7841 85 10.4031419754028 110.464367752633 89.8407 88.0000 14.9762 188 4.1757
1020 632.7556 CI 2.8434 772.7556 501.0000 777.7940 45 7.56939744949341 271.770434989097 159.7806 140.0000 87.8470 161 4.9124
1021 16877.8652 C 38.4224 17048.8652 21018.0000 9912.8203 97 11.1132459640503 443.721526540394 226.8050 171.0000 181.8143 165 131.0302
1022 13780.0498 C 104.5640 13881.0498 10457.0000 11839.5996 142 13.4461898803711 132.751725577584 103.3000 101.0000 21.1678 124 106.9805
1024 29.2373 0.2270 G 1.0957 122.2373 117.0000 23.6352 59 8.66724491119385 111.557108790735 93.9066 93.0000 12.3714 188 0.2270

Total number of rows: 36227

Table truncated, full table size 4564 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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