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Sample GSM116765 Query DataSets for GSM116765
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 70Gy (g_nrs1_70_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 70Gy
Data processing global median normalization
 
Submission date Jun 28, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 3065.1438 21.1915 G 34.1886 3143.1438 3862.0000 2078.5874 148 13.7273254394531 91.9355305826266 77.5622 78.0000 9.2904 225 21.1915
1003 29.9753 0.2072 G 1.1830 107.9753 107.0000 12.9309 81 10.1554126739502 91.2713052436918 78.1944 78.0000 8.8475 186 0.2072
1004 77.3523 0.5348 G 1.6980 154.3523 152.0000 22.4120 88 10.5851345062256 90.9038984606584 77.4670 77.0000 9.2693 188 0.5348
1005 864.3636 5.9759 G 10.4866 941.3636 1111.0000 475.1992 88 10.5851345062256 89.7686264488289 77.7072 77.0000 8.5124 187 5.9759
1006 9.7949 L 0.9521 87.7949 87.0000 9.6401 39 7.04672574996948 92.2107946505282 78.1264 78.0000 9.4739 180 0.0677
1010 1080.6595 7.4714 G 12.9013 1156.6595 1425.0000 594.5251 143 13.4934520721436 89.6545258870332 77.4786 76.0000 9.1030 121 7.4714
1012 1049.9091 7.2588 G 12.3215 1126.9091 1298.0000 630.3715 99 11.2272310256958 91.4589976234511 78.2363 77.0000 9.6393 188 7.2588
1013 36.3056 0.2510 G 1.2500 114.3056 115.0000 14.2025 72 9.57461452484131 91.4446551009867 78.7582 78.0000 8.9631 188 0.2510
1017 26.1556 0.1808 G 1.1437 103.1556 101.0000 15.6723 90 10.7047443389893 90.1957676138007 77.3600 77.0000 8.7972 104 0.1808
1018 57.8667 0.4001 G 1.4860 135.8667 135.0000 20.3225 90 10.7047443389893 91.4307145729636 77.6453 78.0000 8.9538 178 0.4001
1019 568.9375 3.9335 G 7.2074 645.9375 800.0000 317.8750 96 11.0558128356934 89.6217884369207 76.8242 77.0000 8.4145 188 3.9335
1020 20.3559 0.1407 G 1.0932 96.3559 96.0000 11.2879 59 8.66724491119385 88.1380362114212 76.7901 76.0000 8.0920 187 0.1407
1024 7.7647 L 0.9353 84.7647 84.0000 12.6330 34 6.57952451705933 90.6312070468882 78.6111 77.0000 9.0875 186 0.0537
1026 981.0238 6.7825 G 11.6428 1058.0238 1216.0000 492.9875 128 12.7661533355713 90.8733037100333 77.6583 77.0000 9.2489 124 6.7825
1027 15.6000 0.1079 G 1.0253 93.6000 94.0000 8.7155 50 7.97884559631348 91.292122837364 77.6484 78.0000 8.8614 188 0.1079
1030 67.9730 0.4699 G 1.6293 144.9730 145.0000 21.0103 113 11.9948348999023 88.9793718713083 76.6055 77.0000 7.9862 113 0.4699
1031 67.8774 0.4693 G 1.6029 145.8774 142.0000 24.9444 108 11.7264604568481 91.0094953583751 78.1905 78.0000 8.6730 109 0.4693
1034 405.8772 2.8061 G 5.2731 483.8772 547.0000 194.4783 116 12.1530151367188 91.7628055383366 78.7193 78.0000 9.1752 118 2.8061
1039 52.9327 0.3660 G 1.4478 128.9327 128.0000 17.9547 106 11.617374420166 89.05703634574 76.8083 76.0000 8.7047 124 0.3660
1040 11.1111 L 0.9679 89.1111 89.0000 12.2307 63 8.95623207092285 92.0695622485315 79.2667 78.0000 9.3797 124 0.0768

Total number of rows: 36227

Table truncated, full table size 4571 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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