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| Status |
Public on Jul 07, 2006 |
| Title |
Ileum_PA01-colonized_rep1_9776 |
| Sample type |
RNA |
| |
|
| Source name |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
|
| Organism |
Mus musculus |
| Characteristics |
Strain: NMRI,
Age: Adult,
Tissue: Ileum,
Microbial colonization state: colonized with Pseudomonas aeruginosa PAO1,
Days post-colonization: 14,
Replicate: 1 of 5
|
| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
|
| Description |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
|
| Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
|
| |
|
| Submission date |
Jun 29, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
John F Rawls |
| E-mail(s) |
jfrawls@med.unc.edu
|
| Phone |
919-966-8340
|
| Fax |
919 966-6927
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Cell and Molecular Physiology
|
| Street address |
111 Mason Farm Rd.
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-7545 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
| VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
| Data table |
| ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
| 1415670_at |
7195 |
P |
989.557642 |
| 1415671_at |
7204.3 |
P |
1302.856201 |
| 1415672_at |
10046.8 |
P |
1366.833522 |
| 1415673_at |
592.4 |
P |
83.921774 |
| 1415674_a_at |
5105 |
P |
1003.079879 |
| 1415675_at |
3527 |
P |
669.751811 |
| 1415676_a_at |
13392 |
P |
2552.44813 |
| 1415677_at |
2281.5 |
P |
633.741297 |
| 1415678_at |
12892.1 |
P |
2312.434673 |
| 1415679_at |
21608.4 |
P |
3363.539983 |
| 1415680_at |
3789.8 |
P |
526.568495 |
| 1415681_at |
7063.2 |
P |
1219.486439 |
| 1415682_at |
2293.8 |
P |
431.672048 |
| 1415683_at |
11701.6 |
P |
1915.540246 |
| 1415684_at |
2783.9 |
P |
556.708905 |
| 1415685_at |
2276.2 |
P |
328.701554 |
| 1415686_at |
6136.8 |
P |
982.664281 |
| 1415687_a_at |
31967.9 |
P |
4845.967165 |
| 1415688_at |
8899.5 |
P |
1524.498281 |
| 1415689_s_at |
2681.1 |
P |
451.795152 |
Total number of rows: 45101
Table truncated, full table size 1315 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM117089.CEL.gz |
6.4 Mb |
(ftp)(http) |
CEL |
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