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Status |
Public on Jul 07, 2006 |
Title |
Ileum_PA01-colonized_rep2_9777 |
Sample type |
RNA |
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Source name |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
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Organism |
Mus musculus |
Characteristics |
Strain: NMRI, Age: Adult, Tissue: Ileum, Microbial colonization state: colonized with Pseudomonas aeruginosa PAO1, Days post-colonization: 14, Replicate: 2 of 5
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Extracted molecule |
total RNA |
Label |
Biotin
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Description |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
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Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
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Submission date |
Jun 29, 2006 |
Last update date |
Aug 28, 2018 |
Contact name |
John F Rawls |
E-mail(s) |
jfrawls@med.unc.edu
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Phone |
919-966-8340
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Fax |
919 966-6927
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Organization name |
University of North Carolina at Chapel Hill
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Department |
Department of Cell and Molecular Physiology
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Street address |
111 Mason Farm Rd.
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City |
Chapel Hill |
State/province |
NC |
ZIP/Postal code |
27599-7545 |
Country |
USA |
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Platform ID |
GPL1261 |
Series (1) |
GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
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Relations |
Reanalyzed by |
GSE119085 |
Data table header descriptions |
ID_REF |
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Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
Data table |
ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
1415670_at |
4523.7 |
P |
730.044085 |
1415671_at |
6821.3 |
P |
1298.698432 |
1415672_at |
7883.3 |
P |
1260.897474 |
1415673_at |
490.7 |
P |
71.507508 |
1415674_a_at |
3449.3 |
P |
806.115186 |
1415675_at |
3704.8 |
P |
632.498679 |
1415676_a_at |
11271.7 |
P |
2150.449423 |
1415677_at |
2245.7 |
P |
506.715551 |
1415678_at |
13060.6 |
P |
2499.291247 |
1415679_at |
12141.1 |
P |
2302.321331 |
1415680_at |
2705.7 |
P |
494.708905 |
1415681_at |
5351.1 |
P |
1214.175237 |
1415682_at |
1785.4 |
P |
328.263577 |
1415683_at |
14762.2 |
P |
2040.849776 |
1415684_at |
2343.1 |
P |
483.617996 |
1415685_at |
2981.8 |
P |
450.073105 |
1415686_at |
4230.5 |
P |
1002.523309 |
1415687_a_at |
32624 |
P |
4795.29239 |
1415688_at |
10015.6 |
P |
1639.944108 |
1415689_s_at |
2068.7 |
P |
456.115485 |
Total number of rows: 45101
Table truncated, full table size 1315 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM117090.CEL.gz |
6.0 Mb |
(ftp)(http) |
CEL |
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