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Sample GSM117090 Query DataSets for GSM117090
Status Public on Jul 07, 2006
Title Ileum_PA01-colonized_rep2_9777
Sample type RNA
 
Source name Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
Organism Mus musculus
Characteristics Strain: NMRI,
Age: Adult,
Tissue: Ileum,
Microbial colonization state: colonized with Pseudomonas aeruginosa PAO1,
Days post-colonization: 14,
Replicate: 2 of 5
Extracted molecule total RNA
Label Biotin
 
Description Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
Data processing Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
 
Submission date Jun 29, 2006
Last update date Aug 28, 2018
Contact name John F Rawls
E-mail(s) jfrawls@med.unc.edu
Phone 919-966-8340
Fax 919 966-6927
Organization name University of North Carolina at Chapel Hill
Department Department of Cell and Molecular Physiology
Street address 111 Mason Farm Rd.
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7545
Country USA
 
Platform ID GPL1261
Series (1)
GSE5198 Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
Raw_Value a raw unnormalized measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC)
VALUE a normalized measure of the abundance of a transcript following RMA normalization

Data table
ID_REF Raw_Value ABS_CALL VALUE
1415670_at 4523.7 P 730.044085
1415671_at 6821.3 P 1298.698432
1415672_at 7883.3 P 1260.897474
1415673_at 490.7 P 71.507508
1415674_a_at 3449.3 P 806.115186
1415675_at 3704.8 P 632.498679
1415676_a_at 11271.7 P 2150.449423
1415677_at 2245.7 P 506.715551
1415678_at 13060.6 P 2499.291247
1415679_at 12141.1 P 2302.321331
1415680_at 2705.7 P 494.708905
1415681_at 5351.1 P 1214.175237
1415682_at 1785.4 P 328.263577
1415683_at 14762.2 P 2040.849776
1415684_at 2343.1 P 483.617996
1415685_at 2981.8 P 450.073105
1415686_at 4230.5 P 1002.523309
1415687_a_at 32624 P 4795.29239
1415688_at 10015.6 P 1639.944108
1415689_s_at 2068.7 P 456.115485

Total number of rows: 45101

Table truncated, full table size 1315 Kbytes.




Supplementary file Size Download File type/resource
GSM117090.CEL.gz 6.0 Mb (ftp)(http) CEL

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