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| Status |
Public on Jul 07, 2006 |
| Title |
Ileum_PA01-colonized_rep3_9778 |
| Sample type |
RNA |
| |
|
| Source name |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
|
| Organism |
Mus musculus |
| Characteristics |
Strain: NMRI,
Age: Adult,
Tissue: Ileum,
Microbial colonization state: colonized with Pseudomonas aeruginosa PAO1,
Days post-colonization: 14,
Replicate: 3 of 5
|
| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
|
| Description |
Ileum of adult mouse colonized for 14 days with P. aeruginosa PA01
|
| Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
|
| |
|
| Submission date |
Jun 29, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
John F Rawls |
| E-mail(s) |
jfrawls@med.unc.edu
|
| Phone |
919-966-8340
|
| Fax |
919 966-6927
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Cell and Molecular Physiology
|
| Street address |
111 Mason Farm Rd.
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-7545 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
| VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
| Data table |
| ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
| 1415670_at |
4777 |
P |
762.027086 |
| 1415671_at |
8204.7 |
P |
1315.014313 |
| 1415672_at |
8900.5 |
P |
1238.256278 |
| 1415673_at |
429.2 |
P |
59.990685 |
| 1415674_a_at |
3376.3 |
P |
735.992909 |
| 1415675_at |
3587.1 |
P |
595.897198 |
| 1415676_a_at |
11761.3 |
P |
2479.069795 |
| 1415677_at |
2268.3 |
P |
538.845268 |
| 1415678_at |
14295.4 |
P |
2432.080323 |
| 1415679_at |
14481.9 |
P |
2459.607299 |
| 1415680_at |
2997.9 |
P |
542.000949 |
| 1415681_at |
5603 |
P |
1179.625783 |
| 1415682_at |
1791.9 |
P |
343.006175 |
| 1415683_at |
14431.3 |
P |
2183.897707 |
| 1415684_at |
2192.4 |
P |
480.679386 |
| 1415685_at |
2767.9 |
P |
424.195731 |
| 1415686_at |
3874 |
P |
943.650945 |
| 1415687_a_at |
32605.3 |
P |
4784.678629 |
| 1415688_at |
8370.2 |
P |
1387.00346 |
| 1415689_s_at |
2739.6 |
P |
433.571947 |
Total number of rows: 45101
Table truncated, full table size 1315 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM117096.CEL.gz |
6.3 Mb |
(ftp)(http) |
CEL |
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