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| Status |
Public on Jul 07, 2006 |
| Title |
Ileum_Mouse-microbiota-colonized_rep5_9790 |
| Sample type |
RNA |
| |
|
| Source name |
Ileum of adult mouse colonized for 14 days with a conventional mouse microbiota
|
| Organism |
Mus musculus |
| Characteristics |
Strain: NMRI,
Age: Adult,
Tissue: Ileum,
Microbial colonization state: colonized with conventional mouse microbiota,
Days post-colonization: 14,
Replicate: 5 of 5
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| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
|
| Description |
Ileum of adult mouse colonized for 14 days with a conventional mouse microbiota
|
| Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
|
| |
|
| Submission date |
Jun 29, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
John F Rawls |
| E-mail(s) |
jfrawls@med.unc.edu
|
| Phone |
919-966-8340
|
| Fax |
919 966-6927
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Cell and Molecular Physiology
|
| Street address |
111 Mason Farm Rd.
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-7545 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
| VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
| Data table |
| ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
| 1415670_at |
9329.7 |
P |
1456.820765 |
| 1415671_at |
9620.1 |
P |
1586.518721 |
| 1415672_at |
11377.5 |
P |
1514.989297 |
| 1415673_at |
803.4 |
P |
109.483563 |
| 1415674_a_at |
4233.4 |
P |
893.083266 |
| 1415675_at |
3582.3 |
P |
746.46606 |
| 1415676_a_at |
10862.2 |
P |
2611.99764 |
| 1415677_at |
2019.7 |
P |
504.823643 |
| 1415678_at |
8537.7 |
P |
1836.290146 |
| 1415679_at |
15736.9 |
P |
3138.790894 |
| 1415680_at |
4309.5 |
P |
737.416769 |
| 1415681_at |
6162.5 |
P |
1231.269434 |
| 1415682_at |
2688 |
P |
526.115091 |
| 1415683_at |
12372.7 |
P |
2170.257993 |
| 1415684_at |
3387.5 |
P |
647.739191 |
| 1415685_at |
2910.3 |
P |
451.602091 |
| 1415686_at |
6006.9 |
P |
1231.748434 |
| 1415687_a_at |
21702.6 |
P |
4490.455153 |
| 1415688_at |
6383.4 |
P |
1291.922066 |
| 1415689_s_at |
2811.1 |
P |
507.994786 |
Total number of rows: 45101
Table truncated, full table size 1314 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM117180.CEL.gz |
6.5 Mb |
(ftp)(http) |
CEL |
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