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Status |
Public on Jul 07, 2006 |
Title |
Ileum_Zebrafish-microbiota-colonized_rep3_9793 |
Sample type |
RNA |
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Source name |
Ileum of adult mouse colonized for 14 days with a conventional zebrafish microbiota
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Organism |
Mus musculus |
Characteristics |
Strain: NMRI, Age: Adult, Tissue: Ileum, Microbial colonization state: colonized with conventional zebrafish microbiota, Days post-colonization: 14, Replicate: 3 of 3
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Extracted molecule |
total RNA |
Label |
Biotin
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Description |
Ileum of adult mouse colonized for 14 days with a conventional mouse microbiota
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Data processing |
Raw expression values were normalized using RMA (RMAExpress); Present/absent calls were generated using MAS5.0
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Submission date |
Jun 29, 2006 |
Last update date |
Aug 28, 2018 |
Contact name |
John F Rawls |
E-mail(s) |
jfrawls@med.unc.edu
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Phone |
919-966-8340
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Fax |
919 966-6927
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Organization name |
University of North Carolina at Chapel Hill
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Department |
Department of Cell and Molecular Physiology
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Street address |
111 Mason Farm Rd.
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City |
Chapel Hill |
State/province |
NC |
ZIP/Postal code |
27599-7545 |
Country |
USA |
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Platform ID |
GPL1261 |
Series (1) |
GSE5198 |
Transcriptional profiling of mouse ileum in response to colonization with a zebrafish or mouse gut microbiota |
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Relations |
Reanalyzed by |
GSE119085 |
Data table header descriptions |
ID_REF |
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Raw_Value |
a raw unnormalized measure of the abundance of a transcript |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), or absent (A), marginal (M), or no call (NC) |
VALUE |
a normalized measure of the abundance of a transcript following RMA normalization |
Data table |
ID_REF |
Raw_Value |
ABS_CALL |
VALUE |
1415670_at |
5826.8 |
P |
935.271627 |
1415671_at |
9161.3 |
P |
1501.976447 |
1415672_at |
9941.5 |
P |
1392.342996 |
1415673_at |
695.8 |
P |
73.117394 |
1415674_a_at |
4119.7 |
P |
879.259824 |
1415675_at |
3300.6 |
P |
724.644046 |
1415676_a_at |
10873.4 |
P |
2433.511667 |
1415677_at |
4132.1 |
P |
1226.072541 |
1415678_at |
10342.6 |
P |
2145.159181 |
1415679_at |
18335.6 |
P |
2858.163622 |
1415680_at |
3490.5 |
P |
573.418948 |
1415681_at |
6882.6 |
P |
1205.293863 |
1415682_at |
2451.4 |
P |
440.617996 |
1415683_at |
12346.6 |
P |
2029.411101 |
1415684_at |
2878.9 |
P |
608.468897 |
1415685_at |
2690.4 |
P |
381.446818 |
1415686_at |
5725.3 |
P |
1182.897124 |
1415687_a_at |
31986.2 |
P |
5057.345268 |
1415688_at |
7834.1 |
P |
1393.899245 |
1415689_s_at |
2493.3 |
P |
431.28674 |
Total number of rows: 45101
Table truncated, full table size 1314 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM117205.CEL.gz |
6.3 Mb |
(ftp)(http) |
CEL |
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