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Sample GSM11746 Query DataSets for GSM11746
Status Public on Apr 16, 2004
Title ZR-75-1, 24h, sham
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ZR-75-1 cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ZR-75-1, 24h, sham"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description breast cancer derived cell line treated with fresh medium for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 19, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 .204 963 76 18 72 12 150 72 149 67 265 208 179 180 2 2 -2 .03 0 N .204
2 .657 5011 73 15 70 17 139 70 138 70 289 208 166 167 1 2 -1.586 .03 0 N .657
3 9059 76 16 73 12 131 69 149 78 228 208 179 157 -1 0 N
4 13107 71 14 76 12 126 65 159 77 240 208 191 151 .03 0 N
5 969 63 13 69 11 125 69 148 71 478 208 178 150 .13 0 N
6 5017 69 13 70 11 129 70 151 84 572 208 181 155 .11 0 N
7 -.582 9065 425 445 72 12 322 237 145 72 478 208 174 387 306 204 -.73 .75 0 N -.582
8 -.02 13113 214 154 75 13 255 134 164 79 528 208 197 307 113 112 -.338 .51 0 N -.02
9 1975 62 12 67 13 103 55 129 67 209 208 155 124 .11 0 N
10 6023 62 15 66 14 98 55 109 54 221 208 131 118 .06 0 N
11 10071 63 13 66 15 103 58 123 83 428 156 148 124 .16 0 N
12 4.107 14119 69 14 66 11 117 67 103 63 215 208 124 140 2 27 2.415 -1 0 N 4.107
13 1981 93 34 68 11 124 71 128 67 524 208 154 149 .08 0 N
14 6029 65 13 69 11 104 53 129 70 511 208 155 125 .04 0 N
15 10077 114 45 69 16 132 63 134 69 643 156 161 159 -1 0 N
16 3.91 14125 74 16 71 12 150 128 138 70 554 208 166 180 2 23 2.222 .04 0 N 3.91
17 .442 964 1436 1317 72 12 1841 1605 147 62 241 208 177 2218 1304 1772 .581 .91 0 N .442
18 5012 68 12 70 12 126 66 153 71 258 208 184 151 .1 0 N
19 .478 9060 3153 4080 73 12 4410 5674 144 80 228 208 173 5313 3071 4278 .739 .86 0 N .478
20 13108 80 16 75 14 133 75 159 74 264 208 191 160 .07 0 N

Total number of rows: 20163

Table truncated, full table size 1560 Kbytes.




Supplementary data files not provided

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