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Sample GSM1175058 Query DataSets for GSM1175058
Status Public on Feb 07, 2014
Title Rapa-2 Male 3 [chronic]
Sample type RNA
Source name Rapa male liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 25 months
gender: male
treatment group: Rapamycin
tissue: liver
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 25 mg of liver in each sample using Qiagen Rneasy kit following manufacturer’s protocol. RNA quantity was assessed by Nanodrop and RNA quality was assessed by Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion kit- Illumina TotalPrep RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description R2M 3; Rapa M359
Data processing Data was processed in matlab by log2 transformation and quantile normalization
Submission date Jun 26, 2013
Last update date Feb 07, 2014
Contact name Wilson Chun Yim Fok
Organization name Washington University in St. Louis
Department Hematology
Street address 660 S Euclid Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL6885
Series (2)
GSE48333 The effect of chronic Rapamycin on the transcriptome of old mouse liver
GSE48334 The effect of Rapamycin on the transcriptome of old mouse liver

Data table header descriptions
VALUE log2 transformation and quantile normalization

Data table
ILMN_2896528 11.166
ILMN_2721178 9.432
ILMN_3033922 10.713
ILMN_3092673 12.716
ILMN_2816356 6.741
ILMN_2808939 11.134
ILMN_2634564 8.736
ILMN_2737647 6.673
ILMN_2734484 6.922
ILMN_2952292 7.359
ILMN_2699078 6.386
ILMN_1213681 8.335
ILMN_2735413 9.25
ILMN_2735415 9.524
ILMN_2891688 8.424
ILMN_2637698 8.804
ILMN_2674228 7.968
ILMN_2601546 6.737
ILMN_1230831 6.755
ILMN_2848071 9.718

Total number of rows: 25697

Table truncated, full table size 475 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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