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Sample GSM1175085 Query DataSets for GSM1175085
Status Public on Feb 07, 2014
Title Rapa Female 8 [chronic]
Sample type RNA
 
Source name Rapa female liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 25 months
gender: female
treatment group: Rapamycin
tissue: liver
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 25 mg of liver in each sample using Qiagen Rneasy kit following manufacturer’s protocol. RNA quantity was assessed by Nanodrop and RNA quality was assessed by Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion kit- Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description RF 8; Rapa F635
Data processing Data was processed in matlab by log2 transformation and quantile normalization
 
Submission date Jun 26, 2013
Last update date Feb 07, 2014
Contact name Wilson Chun Yim Fok
E-mail(s) wilson.fok@wustl.edu
Organization name Washington University in St. Louis
Department Hematology
Street address 660 S Euclid Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL6885
Series (2)
GSE48333 The effect of chronic Rapamycin on the transcriptome of old mouse liver
GSE48334 The effect of Rapamycin on the transcriptome of old mouse liver

Data table header descriptions
ID_REF
VALUE log2 transformation and quantile normalization

Data table
ID_REF VALUE
ILMN_2896528 11.28
ILMN_2721178 9.612
ILMN_3033922 10.642
ILMN_3092673 12.896
ILMN_2816356 6.886
ILMN_2808939 11.386
ILMN_2634564 8.803
ILMN_2737647 6.735
ILMN_2734484 6.82
ILMN_2952292 7.231
ILMN_2699078 6.539
ILMN_1213681 8.633
ILMN_2735413 9.218
ILMN_2735415 9.544
ILMN_2891688 7.902
ILMN_2637698 8.272
ILMN_2674228 7.898
ILMN_2601546 6.945
ILMN_1230831 6.717
ILMN_2848071 10.429

Total number of rows: 25697

Table truncated, full table size 475 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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