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Sample GSM1193330 Query DataSets for GSM1193330
Status Public on Jun 30, 2014
Title Normal Relative, Replicate 11
Sample type RNA
 
Source name Alveolar macrophage isolated from Normal Relative
Organism Homo sapiens
Characteristics diagnosis: Normal
tissue: Alveolar Macrophage
Extracted molecule total RNA
Extraction protocol Total RNA extraction.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Affymetrix Expression Analysis Technical Manual, 2005, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneArray scanner.
Data processing The data were analyzed with Affymetrix apt version 1.12, GeneSpring 11.5.1 . Apt was used to determine present/absent calls and GeneSpring RMA normalization was applied.
 
Submission date Jul 22, 2013
Last update date Sep 01, 2016
Contact name Eric Billings
Organization name NHLBI
Street address 10 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20874
Country USA
 
Platform ID GPL96
Series (1)
GSE49072 Alveolar Macrophage Gene Expression in Human Pulmonary Fibrosis
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE RMA normalized expression

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.08104324
AFFX-BioB-M_at 0.3038988
AFFX-BioB-3_at 0.13806868
AFFX-BioC-5_at 0.17228413
AFFX-BioC-3_at 0.16396046
AFFX-BioDn-5_at 0.08592129
AFFX-BioDn-3_at 0.24096298
AFFX-CreX-5_at 0.16340828
AFFX-CreX-3_at 0.09183502
AFFX-DapX-5_at 0.026342392
AFFX-DapX-M_at 0.0974102
AFFX-DapX-3_at 0.056663036
AFFX-LysX-5_at -0.008559704
AFFX-LysX-M_at 0.081169605
AFFX-LysX-3_at 0.050771236
AFFX-PheX-5_at 0.04236698
AFFX-PheX-M_at 0.00666666
AFFX-PheX-3_at 0.23767376
AFFX-ThrX-5_at 0.037086487
AFFX-ThrX-M_at 0.07890797

Total number of rows: 22283

Table truncated, full table size 487 Kbytes.




Supplementary file Size Download File type/resource
GSM1193330_RIPF-3.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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