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Sample GSM1193368 Query DataSets for GSM1193368
Status Public on Jun 30, 2014
Title Normal Volunteer, Replicate 37
Sample type RNA
 
Source name Alveolar macrophage isolated from Normal Volunteer
Organism Homo sapiens
Characteristics diagnosis: Normal
tissue: Alveolar Macrophage
Extracted molecule total RNA
Extraction protocol Total RNA extraction.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Affymetrix Expression Analysis Technical Manual, 2005, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneArray scanner.
Data processing The data were analyzed with Affymetrix apt version 1.12, GeneSpring 11.5.1 . Apt was used to determine present/absent calls and GeneSpring RMA normalization was applied.
 
Submission date Jul 22, 2013
Last update date Sep 01, 2016
Contact name Eric Billings
Organization name NHLBI
Street address 10 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20874
Country USA
 
Platform ID GPL96
Series (1)
GSE49072 Alveolar Macrophage Gene Expression in Human Pulmonary Fibrosis
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE RMA normalized expression

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.17648125
AFFX-BioB-M_at -0.22588444
AFFX-BioB-3_at -0.195467
AFFX-BioC-5_at -0.10033131
AFFX-BioC-3_at -0.030663967
AFFX-BioDn-5_at 0.000870705
AFFX-BioDn-3_at -0.07714367
AFFX-CreX-5_at -0.10906601
AFFX-CreX-3_at -0.12667274
AFFX-DapX-5_at 0.07335758
AFFX-DapX-M_at -0.001513004
AFFX-DapX-3_at 0.03014946
AFFX-LysX-5_at -0.026699543
AFFX-LysX-M_at 0.08745575
AFFX-LysX-3_at -0.009478569
AFFX-PheX-5_at 0.14409304
AFFX-PheX-M_at 0.05213499
AFFX-PheX-3_at -0.005773068
AFFX-ThrX-5_at 0.26950073
AFFX-ThrX-M_at 0.05152607

Total number of rows: 22283

Table truncated, full table size 487 Kbytes.




Supplementary file Size Download File type/resource
GSM1193368_RIPF-78A.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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