NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1193376 Query DataSets for GSM1193376
Status Public on Jun 30, 2014
Title Normal Volunteer, Replicate 42
Sample type RNA
 
Source name Alveolar macrophage isolated from Normal Volunteer
Organism Homo sapiens
Characteristics diagnosis: Normal
tissue: Alveolar Macrophage
Extracted molecule total RNA
Extraction protocol Total RNA extraction.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Affymetrix Expression Analysis Technical Manual, 2005, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneArray scanner.
Data processing The data were analyzed with Affymetrix apt version 1.12, GeneSpring 11.5.1 . Apt was used to determine present/absent calls and GeneSpring RMA normalization was applied.
 
Submission date Jul 22, 2013
Last update date Sep 01, 2016
Contact name Eric Billings
Organization name NHLBI
Street address 10 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20874
Country USA
 
Platform ID GPL96
Series (1)
GSE49072 Alveolar Macrophage Gene Expression in Human Pulmonary Fibrosis
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE RMA normalized expression

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.38306808
AFFX-BioB-M_at 0.38821983
AFFX-BioB-3_at 0.4542737
AFFX-BioC-5_at 0.4641962
AFFX-BioC-3_at 0.44629002
AFFX-BioDn-5_at 0.83389187
AFFX-BioDn-3_at 0.2638111
AFFX-CreX-5_at 0.501174
AFFX-CreX-3_at 0.37586784
AFFX-DapX-5_at -0.0985198
AFFX-DapX-M_at -0.17176676
AFFX-DapX-3_at -0.23117542
AFFX-LysX-5_at -0.037335396
AFFX-LysX-M_at -0.14850044
AFFX-LysX-3_at -0.10359573
AFFX-PheX-5_at -0.07154989
AFFX-PheX-M_at -0.16320944
AFFX-PheX-3_at -0.28669548
AFFX-ThrX-5_at -0.07701969
AFFX-ThrX-M_at -0.14726591

Total number of rows: 22283

Table truncated, full table size 489 Kbytes.




Supplementary file Size Download File type/resource
GSM1193376_RIPF-85A.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap