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Sample GSM1195730 Query DataSets for GSM1195730
Status Public on Jul 26, 2013
Title Medium (SAMPLE 3)
Sample type RNA
Source name monocyte-derived macrophages, Medium
Organism Homo sapiens
Characteristics cell type: monocyte-derived macrophages
culture condition: 10% Human serum
Treatment protocol cells were stimulated with indicated cytokines for 5 days.
Growth protocol Monocytes were isolated from buffy coats of healthy blood donors by lymphoprep density gradient centrifugation followed by plastic adherence and culture in IMDM containing 10% human pool serum, 1% penicillin/streptomycin (Invitrogen, San Diego, CA), and 0.25% ciproxin (Bayer, Leverkusen, Germany).
Extracted molecule total RNA
Extraction protocol Tripure isolation reagent ( roche) + Rneasy cleanup
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing Quantile normalized
Submission date Jul 26, 2013
Last update date Apr 12, 2018
Contact name Fernando O Martinez Estrada
Organization name University of Surrey
Department Faculty of Health & Medical Sciences
Lab Innate Immunity
Street address Stag Hill
City Guildford
State/province Surrey
ZIP/Postal code GU2 7XH
Country United Kingdom
Platform ID GPL10558
Series (2)
GSE35495 Genome-wide analysis of human and mouse macrophages, resting and activated
GSE49240 Similarities and differences between human activated macrophages I

Data table header descriptions
VALUE RMA signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 5.945264753 0.90779
ILMN_2055271 5.914196962 0.87143
ILMN_1736007 5.737190482 0.47403
ILMN_2383229 5.73982961 0.47792
ILMN_1806310 5.836349365 0.72468
ILMN_1779670 5.755793844 0.51429
ILMN_1653355 5.931572891 0.88701
ILMN_1717783 5.516337161 0.05195
ILMN_1705025 5.803699148 0.63507
ILMN_1814316 5.798760198 0.62208
ILMN_2359168 5.686271764 0.34545
ILMN_1731507 5.571808701 0.12338
ILMN_1787689 5.803699148 0.63507
ILMN_3241953 6.776815652 1
ILMN_1745607 9.166003019 1
ILMN_2136495 5.414208496 0.01948
ILMN_1668111 5.729103751 0.44805
ILMN_2295559 5.758348055 0.52468
ILMN_1735045 5.663540845 0.28831
ILMN_1680754 5.976477231 0.93247

Total number of rows: 47311

Table truncated, full table size 1443 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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