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Sample GSM1197699 Query DataSets for GSM1197699
Status Public on Mar 07, 2014
Title Lyz2+_EpCAM+_Adult-1
Sample type RNA
 
Source name Lyz2+/EpCAM+ cells isolated from adult lungs
Organism Mus musculus
Characteristics tissue: Lung
age: Adult
cell population: Lyz2+/EpCAM+
Extracted molecule total RNA
Extraction protocol Total RNA was performed using RNeasy Micro Kit from Qiagen according to the manufacturer's instructions.
Label biotin
Label protocol Total RNA was amplified using the Two-Cycle cDNA synthesis kit from Affymetrix following manufacturer's instructions.
Biotinylated aRNA was prepared with the GeneChip 3' IVT Express Kit from Affymetrix following manufacturer's instructions.
 
Hybridization protocol Hybridization of aRNA to Mouse Genome 430 2.0 Array from Affymetrix was achieved following manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description biological rep1
Data processing The data were analyzed with Expression Console using Affymetrix default analysis settings (MAS 5.0).
 
Submission date Jul 30, 2013
Last update date Mar 07, 2014
Contact name Mark Krasnow
Organization name Stanford University
Street address Beckman Center, B400 279 W. Campus Dr.
City Stanford
State/province Ca
ZIP/Postal code 94305
Country USA
 
Platform ID GPL1261
Series (1)
GSE49346 Expression data from adult ATII and E18 Bipotent progenitor cells in the mouse lung

Data table header descriptions
ID_REF
VALUE MAS5 Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1650.58 P 0.000169025
AFFX-BioB-M_at 2381.36 P 4.42873e-05
AFFX-BioB-3_at 1715.91 P 4.42873e-05
AFFX-BioC-5_at 4406.59 P 5.16732e-05
AFFX-BioC-3_at 7907.02 P 4.42873e-05
AFFX-BioDn-5_at 10107.5 P 4.42873e-05
AFFX-BioDn-3_at 12058.4 P 4.42873e-05
AFFX-CreX-5_at 37324.5 P 5.16732e-05
AFFX-CreX-3_at 37150.2 P 4.42873e-05
AFFX-DapX-5_at 328.25 P 7.00668e-05
AFFX-DapX-M_at 1968.69 P 0.000258358
AFFX-DapX-3_at 3401.59 P 4.42873e-05
AFFX-LysX-5_at 25.0092 A 0.156732
AFFX-LysX-M_at 224.755 P 0.00159257
AFFX-LysX-3_at 2479.07 P 6.02111e-05
AFFX-PheX-5_at 77.378 P 0.0239288
AFFX-PheX-M_at 76.0202 M 0.0542134
AFFX-PheX-3_at 595.688 P 0.00010954
AFFX-ThrX-5_at 73.2875 A 0.0676785
AFFX-ThrX-M_at 48.3398 A 0.165861

Total number of rows: 45101

Table truncated, full table size 1372 Kbytes.




Supplementary file Size Download File type/resource
GSM1197699_Lyz2+_Epcam+_Adult-1.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1197699_Lyz2+_Epcam+_Adult-1.CHP.gz 400.0 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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