|
Status |
Public on Sep 15, 2013 |
Title |
MEFs_Day3_Rep1 |
Sample type |
RNA |
|
|
Source name |
MEFs
|
Organism |
Mus musculus |
Characteristics |
transgene: Oct4-GFP cell type: MEFs
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Trizol reagent in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
Label |
biotin
|
Label protocol |
standard Illumina protocol
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 1 Sample 4
|
Data processing |
The data were normalised using quantile normalisation with Beadarray in R, and significance in changes between sets determined using Limma
|
|
|
Submission date |
Aug 05, 2013 |
Last update date |
Sep 15, 2013 |
Contact name |
Robert Blelloch |
E-mail(s) |
robert.blelloch@ucsf.edu
|
Phone |
415-476-2839
|
Organization name |
UCSF
|
Department |
Urology
|
Lab |
Blelloch
|
Street address |
RMB1018, 35 Medical Center Way
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94143 |
Country |
USA |
|
|
Platform ID |
GPL6885 |
Series (1) |
GSE49556 |
The effect of miR-294 and miR-181 on the transcriptome during OSK reprogramming of MEFs |
|