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Sample GSM1201838 Query DataSets for GSM1201838
Status Public on Dec 31, 2014
Title Pten cKO rep3
Sample type RNA
 
Source name Mouse inner ear
Organism Mus musculus
Characteristics developmental stage: E14.5
genotype: Pax2Cre/+;PtenloxP/loxP
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol reagent according to manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared with Illumina TotalPrep RNA Amplification Kit (Ambion).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing Data processing and analysis were performed using Illumina GenomeStudio v1.5.4 (Gene Expression Module v2009.2)
 
Submission date Aug 05, 2013
Last update date Dec 31, 2014
Contact name Hyung Jin Kim
E-mail(s) hjkim318@gmail.com
Phone +82-43-719-8617
Organization name Korea National Institute of Health
Department Division of Intractable Diseases, Center for Biomedical Sciences
Lab Intractable Diseases
Street address 187 Osongsaengmyeong 2-ro
City Osong-eup, Cheongwon-gun, Chungcheongbuk-do
ZIP/Postal code 363-951
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE49562 Exploring the gene expression associated with Pten deficiency in the developing inner ear

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 13.24388 0
ILMN_2721178 10.636512 0
ILMN_3033922 10.418512 0
ILMN_3092673 13.189085 0
ILMN_2816356 7.739184 0
ILMN_2808939 10.405284 0
ILMN_2634564 9.737428 0
ILMN_2737647 null 0.1503759
ILMN_2734484 8.124997 0
ILMN_2952292 8.302086 0
ILMN_2699078 null 0.2218045
ILMN_1213681 10.134531 0
ILMN_2735413 null 0.9385965
ILMN_2735415 null 0.2293233
ILMN_2891688 10.005604 0
ILMN_2637698 10.291988 0
ILMN_2674228 9.890146 0
ILMN_2601546 null 0.1654135
ILMN_1230831 null 0.8182957
ILMN_2848071 null 0.3446115

Total number of rows: 25697

Table truncated, full table size 674 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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