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Sample GSM1205184 Query DataSets for GSM1205184
Status Public on Jul 15, 2015
Title lung Prdm11_rep3
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics Sex: female
strain: C57BL/6N
genotype/variation: Prdm11 knockout mice
age: 22 weeks
mouse id: 30144785
treatment: none
Treatment protocol Mice were sensitized by i.p. injection of 10 µg OVA in 2 mg alum in 200 µg PBS. Mice were subsequently challenged three time by inhalative exposure to OVA aerosol (1% in PBS) for 30 min for weeks after i.p. injection as described in Alessandrini et al, 2006, J Allergy Clin Immunol.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 09, 2013
Last update date Jul 15, 2015
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE49705 Transcriptome analysis of Prdm11 knockout mice after OVA challenge

Data table header descriptions
VALUE cubic spline normalized

Data table
ILMN_2918977 66.9
ILMN_2918981 67.9
ILMN_1236993 79.0
ILMN_2618329 264.3
ILMN_2939951 351.5
ILMN_1227882 94.6
ILMN_2793827 3210.6
ILMN_2745741 37.4
ILMN_2711892 22.8
ILMN_2676940 110
ILMN_1242531 63.3
ILMN_3161404 73.8
ILMN_1225633 79.2
ILMN_2756696 101.2
ILMN_2914510 114.8
ILMN_1257919 37.1
ILMN_1218471 52.6
ILMN_2604393 106.5
ILMN_2828265 75
ILMN_2663914 92.9

Total number of rows: 25697

Table truncated, full table size 457 Kbytes.

Supplementary data files not provided
Raw data not provided for this record
Processed data included within Sample table

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