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Sample GSM120821 Query DataSets for GSM120821
Status Public on Dec 01, 2007
Title PGC-1alpha 3
Sample type RNA
 
Source name pgc-1alpha-infected
Organism Mus musculus
Characteristics Mouse embryo fibroblast tsc2--
confluent TSC2-/- MEFs
Treatment protocol confluent TSC2-/- MEFs were infected with adenovirus expressing PGC-1alpha for 10 hours, media was changed and cells were harvested 14 hours later.
Growth protocol TSC2-/- MEFs were cultured in DMEM containing 10%CCS. Media was changed at time of treatment.
Extracted molecule total RNA
Extraction protocol trizol isolation
Label Biotin
Label protocol standard affymetrix labelling protocol
 
Hybridization protocol standard affymetrix hybridization protocol
Description Affymetrix original enzo processing protocol
Data processing Data were analyzed by RMA (with default settings) in BioConductor 1.2
Global scaling to TGT 150
 
Submission date Jul 18, 2006
Last update date Aug 28, 2018
Contact name Pere Puigserver
E-mail(s) Pere_Puigserver@dfci.harvard.edu
Phone 617-582-7977
Organization name Dana-Farber Cancer Institute
Department Cancer Biology
Lab Smith 936
Street address 1 Jimmy Fund Way
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE5332 mTOR pathway controls mitochondrial gene expression and respiration through the YY1/PGC-1alpha transcriptional complex
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal Intensity

Data table
ID_REF VALUE
1415670_at 1361.73
1415671_at 996.071
1415672_at 1582.549
1415673_at 649.749
1415674_a_at 615.255
1415675_at 564.695
1415676_a_at 3574
1415677_at 280.884
1415678_at 870.65
1415679_at 1232.214
1415680_at 1519.452
1415681_at 1198.03
1415682_at 507.291
1415683_at 2468.345
1415684_at 266.23
1415685_at 168.912
1415686_at 739.879
1415687_a_at 1039.753
1415688_at 1363.153
1415689_s_at 323.993

Total number of rows: 45101

Table truncated, full table size 828 Kbytes.




Supplementary file Size Download File type/resource
GSM120821.CEL.gz 6.2 Mb (ftp)(http) CEL

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