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Sample GSM1213089 Query DataSets for GSM1213089
Status Public on Apr 13, 2014
Title MOC22A
Sample type RNA
 
Source name mouse oral cancer cell line
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/variation: WT
cell line: mouse oral cancer cell line MOC22
gender: female
growth: indolent
metastatic: NO
Treatment protocol No treatments
Growth protocol Standard mouse oral cancer cell line media
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent or Rneasy mini kits, followed by clean-up and DNase I treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6952 - MOC22A
Replicate 1
Data processing GSGX Version: 1.8.0
Analysis: Individual_cubic_spline_bkgd
The data were normalized using cubic spline normalization
 
Submission date Aug 20, 2013
Last update date Apr 13, 2014
Contact name ravindra uppaluri
E-mail(s) uppalurr@wustl.edu
Organization name Washington University
Street address 660 South Euclid Avenue
City St. Louis
ZIP/Postal code 63110
Country USA
 
Platform ID GPL6885
Series (1)
GSE50041 Comparative analysis of mouse oral cancer cell lines

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
BEAD_STDERR
Avg_NBEADS
Detection Pval

Data table
ID_REF VALUE BEAD_STDERR Avg_NBEADS Detection Pval
ILMN_1248788 -1 5.835 36 0.48747
ILMN_2707227 225.5 14.086 35 0
ILMN_2896528 1012.6 39.998 35 0
ILMN_2721178 268.5 18.011 33 0
ILMN_1227723 353.2 13.966 39 0
ILMN_3033922 1443 55.856 38 0
ILMN_3092673 4850.1 126.259 50 0
ILMN_2730714 6034.9 168.11 50 0
ILMN_3162224 2684.5 79.936 49 0
ILMN_2816356 34.7 8.053 27 0.06516
ILMN_2808939 1349.2 51.325 28 0
ILMN_2634564 636.3 31.025 44 0
ILMN_1216623 763.9 24 58 0
ILMN_1215157 1106.2 42.723 43 0
ILMN_1228777 -15.5 3.513 39 0.92857
ILMN_2737647 9.9 5.965 33 0.22807
ILMN_1216425 -7.1 4.418 34 0.70426
ILMN_2734484 352.8 22.95 38 0
ILMN_2652961 -11.6 4.87 42 0.85213
ILMN_2952292 110.6 7.98 49 0.00125

Total number of rows: 25697

Table truncated, full table size 839 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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