|
| Status |
Public on Apr 13, 2014 |
| Title |
LNA |
| Sample type |
RNA |
| |
|
| Source name |
mouse oral cancer cell line
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
genotype/variation: WT
cell line: mouse oral cancer cell line (a lymph node metastasis of the MOC2 tumor)
gender: female
growth: not done
metastatic: not done
|
| Treatment protocol |
No treatments
|
| Growth protocol |
Standard mouse oral cancer cell line media
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol reagent or Rneasy mini kits, followed by clean-up and DNase I treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
6956 - LNA
Replicate 1
|
| Data processing |
GSGX Version: 1.8.0
Analysis: Individual_cubic_spline_bkgd
The data were normalized using cubic spline normalization
|
| |
|
| Submission date |
Aug 20, 2013 |
| Last update date |
Apr 13, 2014 |
| Contact name |
ravindra uppaluri |
| E-mail(s) |
uppalurr@wustl.edu
|
| Organization name |
Washington University
|
| Street address |
660 South Euclid Avenue
|
| City |
St. Louis |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL6885 |
| Series (1) |
| GSE50041 |
Comparative analysis of mouse oral cancer cell lines |
|
