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Sample GSM122521 Query DataSets for GSM122521
Status Public on Jul 21, 2006
Title wild type 2 cell embryo rep3
Sample type RNA
 
Source name wild type 2 cell embryo rep3
Organism Mus musculus
Characteristics in vivo,2 cell stage, embryo
Extracted molecule total RNA
Extraction protocol Total RNA from 20 embryos was extracted and purified using an Picopure kit (Arcturus).
Label biotin
Label protocol total RNA from 20 embryos was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type whole embryo
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jul 21, 2006
Last update date Jul 21, 2006
Contact name Hua Pan
E-mail(s) huapan@sas.upenn.edu
Organization name University of Pennsylvania
Department Department of Biology
Street address 415 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1261
Series (1)
GSE5371 Maternal BRG1 regulates zygotic genome activation in the mouse

Data table header descriptions
ID_REF
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
VALUE MAS5-calculated Signal intensity

Data table
ID_REF ABS_CALL VALUE
1415670_at P 157.2
1415671_at P 648.7
1415672_at P 1509.5
1415673_at A 55.5
1415674_a_at P 249.5
1415675_at P 232.1
1415676_a_at P 582.7
1415677_at P 224.9
1415678_at P 3184.8
1415679_at P 5263.7
1415680_at P 586.6
1415681_at P 123.6
1415682_at P 262.6
1415683_at P 559.9
1415684_at P 845.7
1415685_at P 46.1
1415686_at P 1331.4
1415687_a_at P 339.7
1415688_at P 4167.7
1415689_s_at A 43

Total number of rows: 45101

Table truncated, full table size 806 Kbytes.




Supplementary data files not provided

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