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GEO accession:
Sample GSM12269
Query DataSets for GSM12269
Status
Public on Nov 25, 2003
Title
N1 Normal Human Kidney U133B
Sample type
RNA
Source name
Trizol isolation of total RNA from normal tissue adjacent to Renal Cell Carcinoma
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Age = 51; Gender = Male; Left Kidney; Adjacent Tumor Type = clear cell; Adjacent Tumor Fuhrman Grade = 3; Adjacent Tumor Capsule Penetration = false; Adjacent Tumor Perinephric Fat Invasion = false; Adjacent Tumor Renal Sinus Invasion = true; Adjacent Tumor Renal Vein Invasion = true; Adjacent Tumor Location: mid; Scaling Target = 500; Scaling Factor = 22.09; Raw Q = 2.04; Noise = 1.74; Background = 46.76.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2002912
Submission date
Oct 23, 2003
Last update date
May 28, 2005
Contact name
Marc E. Lenburg
E-mail(s)
mlenburg@bu.edu
Phone
617-414-1375
Fax
617-414-1646
URL
http://gg.bu.edu
Organization name
Boston University School of Medicine
Department
Genetics and Genomics
Street address
715 Albany Street, E613B
City
Boston
State/province
MA
ZIP/Postal code
02130
Country
USA
Platform ID
GPL97
Series (1)
GSE781
Normal and Renal Cell Carcinoma Kidney Tissue, Human
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
937
A
AFFX-BioB-M_at
1052.5
P
AFFX-BioB-3_at
1318.4
P
AFFX-BioC-5_at
3575.3
P
AFFX-BioC-3_at
2043.1
P
AFFX-BioDn-5_at
2920.7
P
AFFX-BioDn-3_at
18747.6
P
AFFX-CreX-5_at
28717.5
P
AFFX-CreX-3_at
40967.4
P
AFFX-DapX-5_at
210.3
A
AFFX-DapX-M_at
433.3
A
AFFX-DapX-3_at
212.4
A
AFFX-LysX-5_at
97.9
A
AFFX-LysX-M_at
285.2
A
AFFX-LysX-3_at
331.5
A
AFFX-PheX-5_at
42.9
A
AFFX-PheX-M_at
118.4
A
AFFX-PheX-3_at
79
A
AFFX-ThrX-5_at
54.1
A
AFFX-ThrX-M_at
63
A
Total number of rows:
22645
Table truncated, full table size
401 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM12269.CEL.gz
3.4 Mb
(ftp)
(http)
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