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Sample GSM122930 Query DataSets for GSM122930
Status Public on Sep 08, 2006
Title MAQC_ILM_2_C1
Sample type RNA
 
Source name MAQC sample C, i.e., MAQC samples A and B mixed at 75%:25% ratio (A:B).
Organism Homo sapiens
Characteristics NA

Extracted molecule total RNA
Label biotin
Label protocol 200 ng of total RNA provided by the MAQC were amplified and labeled using the Illumina(R) TotalPrep(TM) RNA Amplification kit (Ambion; catalog #IL1791).
 
Hybridization protocol Illumina Human-6 whole genome microarrays (Illumina; catalog # BD-25-101) were hybridized to 1.5 micrograms of labeled, amplified material, and then washed, stained, and scanned according to the protocol described in the Illumina Whole Genome Gene Expression for BeadStation Manual, Revision D.
Scan protocol Scanning software was BeadScan 2.3.0.10.
Description NA
Data processing Data was processed using Illumina BeadStudio version 1.5.0.34 software using background subtraction and cubic spline normalization.
 
Submission date Jul 24, 2006
Last update date Aug 14, 2006
Contact name Leming Shi
E-mail(s) lemingshi@fudan.edu.cn
Phone +86-18616827008
Organization name Fudan University
Department School of Life Sciences
Lab Center for Pharmacogenomics
Street address 2005 Songhu Road
City Shanghai
ZIP/Postal code 200438
Country China
 
Platform ID GPL2507
Series (1)
GSE5350 MicroArray Quality Control (MAQC) Project

Data table header descriptions
ID_REF Manufacturer's probe ID
VALUE Data were quantile-normalized per test site (20 arrays). Normalized hybridization intensity values were adjusted by adding a constant such that the lowest intensity value for any sample equaled 16.
Flag_Detection Present: >= 0.99, Absent: <0.99.

Data table
ID_REF VALUE Flag_Detection
GI_23097300-A 43.9 .70599868
GI_21070955-A 1374.3 1
GI_4505876-A 1802.4 1
GI_18860893-A 99.2 .9993408
GI_27597081-A 212.2 1
GI_23238255-A 93.3 .99868161
GI_13929463-A 501.1 1
GI_27734993-A 457.6 1
GI_8922201-A 94.5 .9993408
GI_9845515-A 1841.2 1
GI_23238201-A 51.4 .88200396
GI_27436965-A 667.6 1
GI_35493859-A 50.1 .86222808
GI_34808709-A 171.2 .9993408
GI_27436935-A 51.6 .88398154
GI_37577147-A 647.5 1
GI_19913415-A 227.8 1
GI_23510409-A 79.4 .99406724
GI_30581118-A 44.5 .72841134
GI_40354193-A 9916.2 1

Total number of rows: 47293

Table truncated, full table size 1208 Kbytes.




Supplementary file Size Download File type/resource
GSM122930_ILM_2_C1.txt.gz 505.0 Kb (ftp)(http) TXT

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