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Sample GSM123489 Query DataSets for GSM123489
Status Public on Mar 23, 2015
Title 1351_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Jul 28, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13302.9463 165.1746 G 142.3064 13381.9463 8077.0000 13309.4414 189 15.5126485824585 94.0361847695774 80.0167 79.0000 10.0241 124
1002 1 1111.5189 13.8011 G 12.8412 1187.5189 1342.0000 624.2404 108 11.7264604568481 92.4773378491525 76.4333 76.0000 10.9849 186
1003 1 9.0286 0.1121 L 0.8793 95.0286 97.0000 15.6232 35 6.67558097839355 108.076080023683 87.7840 86.0000 14.7174 168
1004 1 28.2787 0.3511 G 1.1079 109.2787 109.0000 13.3688 61 8.81292343139648 98.6328275819327 80.5556 81.0000 11.7552 168
1005 1 8.4848 0.1054 L 0.8892 82.4848 83.0000 10.5288 33 6.48204469680786 92.7603161931344 76.1834 74.0000 12.5069 175
1006 1 18.4194 0.2287 G 1.0028 92.4194 98.0000 12.4273 31 6.2825493812561 92.1599482657372 75.6723 74.0000 12.1066 183
1007 1 28.9538 0.3595 G 1.1524 104.9538 104.0000 13.6950 65 9.09728336334229 91.0774456012932 75.5769 76.0000 10.0516 188
1008 1 12532.5479 155.6091 G 134.3801 12610.5479 4312.0000 13463.9551 192 15.6352806091309 93.8423463764161 78.9911 78.0000 10.5616 233
1009 1 439.0721 5.4517 G 5.5657 516.0721 560.0000 208.3405 97 11.1132459640503 92.7243070383846 77.0994 77.0000 10.4829 187
1010 1 730.8737 9.0748 G 9.0482 804.8737 929.0000 394.9236 95 10.9980792999268 88.9541147635774 74.3791 74.0000 9.9694 188
1011 1 165.8571 2.0593 G 2.7221 239.8571 249.0000 64.9863 91 10.7640514373779 88.1147597512655 74.0659 74.0000 9.4098 188
1012 1 137.0128 1.7012 G 2.3514 211.0128 220.0000 51.3169 78 9.96557521820068 89.7405225370358 74.5275 74.0000 10.4937 188
1013 1 41.0685 0.5099 G 1.2876 116.0685 115.0000 16.1562 73 9.64087581634521 90.1442525619717 74.8297 75.0000 10.0962 188
1014 1 109.8171 1.3635 G 2.0724 182.8171 187.0000 40.6031 82 10.2179079055786 88.2166382942545 73.5000 73.0000 10.1444 188
1015 1 13605.6934 168.9337 G 145.7111 13683.6934 5763.0000 14416.2598 229 17.075475692749 93.9097295358573 78.6637 78.0000 10.6065 234
1016 1 56.9259 0.7068 G 1.4612 133.9259 131.0000 22.5141 81 10.1554126739502 91.6535372841461 77.2778 77.0000 9.7690 186
1017 1 18.8772 0.2344 G 1.0357 93.8772 95.0000 11.9869 57 8.51907634735107 90.6405265559834 75.5424 75.0000 10.4270 183
1018 1 10.7568 0.1336 L 0.9365 85.7568 83.0000 12.4995 37 6.86366271972656 91.5725253339932 75.4885 75.0000 11.0483 180
1019 1 9.6829 0.1202 L 0.9200 88.6829 91.0000 14.3585 41 7.22515201568604 96.3977224819611 79.5055 79.0000 11.5985 188
1020 1 51.1429 0.6350 G 1.2336 136.1429 137.0000 26.5649 70 9.44069766998291 110.36068653383 88.0179 85.0000 16.9071 174

Total number of rows: 54359

Table truncated, full table size 6585 Kbytes.




Supplementary file Size Download File type/resource
GSM123489.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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