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Sample GSM123509 Query DataSets for GSM123509
Status Public on Aug 30, 2006
Title Control Group, Line 2, Replicate 2, Female
Sample type RNA
 
Source name Female Drosophila adults, age 3-7 days
Organism Drosophila melanogaster
Characteristics artificially selected, wild-derived lines
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
 
Description Gene expression data from adult female flies of the control group of an artificial selection experiment for aggression.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 28, 2006
Last update date Aug 28, 2018
Contact name Alexis Edwards
E-mail(s) acedward@ncsu.edu
Organization name North Carolina State University
Department Genetics
Lab Trudy Mackay
Street address Campus Box 7614
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL1322
Series (1)
GSE5404 Expression data from Drosophila subjected to artificial selection on aggression
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF Probe Set ID for Affymetrix Drosophila GeneChip 2.0
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE 'P_Value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1616608_a_at 13038.1 P 0.0005
1622892_s_at 368.4 P 0.0006
1622893_at 14321.2 P 0.0005
1622894_at 59.0 A 0.0886
1622895_at 736.7 P 0.0021
1622896_at 399.4 P 0.0005
1622897_at 6.9 A 0.8016
1622898_a_at 1073.7 P 0.0005
1622899_at 18.4 A 0.1983
1622900_at 11.2 A 0.2968
1622901_at 170.4 P 0.0240
1622902_at 392.9 P 0.0152
1622903_s_at 550.2 P 0.0005
1622904_at 18.0 A 0.1652
1622905_at 3.6 A 0.7648
1622906_at 817.7 P 0.0012
1622907_at 716.6 P 0.0005
1622908_a_at 219.7 P 0.0046
1622909_at 1532.8 P 0.0005
1622910_at 30.6 A 0.1984

Total number of rows: 18769

Table truncated, full table size 472 Kbytes.




Supplementary file Size Download File type/resource
GSM123509.CEL.gz 2.1 Mb (ftp)(http) CEL

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